DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PGAP1 and AT3G27325

DIOPT Version :9

Sequence 1:NP_572245.1 Gene:PGAP1 / 31487 FlyBaseID:FBgn0029789 Length:980 Species:Drosophila melanogaster
Sequence 2:NP_001189986.1 Gene:AT3G27325 / 822352 AraportID:AT3G27325 Length:1121 Species:Arabidopsis thaliana


Alignment Length:1166 Identity:252/1166 - (21%)
Similarity:421/1166 - (36%) Gaps:341/1166 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LLVIGSICCFIY-GLFRLHVEVEP--NACRMTYMFGEPMFAKVGVRDGDQYPNYALYYYYEGLRQ 71
            |.::|.:....: ||..|...::|  |.|.||||:  |.:..:.|.|......|.||.|:||.|:
plant    50 LRIVGVLILAAWIGLVALFGLLKPIKNGCTMTYMY--PTYIPISVTDDTTPGRYGLYLYHEGWRK 112

  Fly    72 PLDPLK--RRMTGAPVIFVPGNAGSYKQVRSLASVALR--------KAMSNDAGI---------- 116
             :|..:  ::::|.||:|:||||||||||||:|:.:.|        :....:|.:          
plant   113 -IDFKEHLKKLSGVPVLFIPGNAGSYKQVRSVAAESDRAFQGGPFERTFYQEASLLRGGGADTES 176

  Fly   117 -----------HLDYYTIDYDEELSALYGGYLHRQQSYLKLCIRTILSIY---------EGRTEQ 161
                       .||::.:|.:.|.||:.|..|.....|:...|..||..|         ||....
plant   177 VDYDLPSQYSNRLDWFAVDLEGEHSAMDGRILEEHTEYVVYAIHRILDQYKESHDTREREGAAAS 241

  Fly   162 P----SIVLIGHSMGGKLAQSVLVDPAIGQH-INTIISISTPLDQPVLNLDTQLEEFYDQTDAVL 221
            .    .::|:||||||.:|::..|.|.:.:. :.||:::|:|...|.|.|...|..::.|.:...
plant   242 SKLPHDVILVGHSMGGFVARAAAVHPRLRKSAVQTILTLSSPHQSPPLALQPSLGHYFAQVNREW 306

  Fly   222 SKLRTATVPTMTTNVCDSLHQRPPSVQRMASQDSSARLDNVLLISTGGGNRDLLVR------PGL 280
            .|............|.|.|                  |..|:::|..||..|..||      .|:
plant   307 KKGYEVQTSPGGNYVSDPL------------------LSGVVVVSISGGYNDYQVRSKLESLDGI 353

  Fly   281 TSSRFNDLHAMTSAIPKVSLSCDHLSAVWCLQFMQAINRFLFSVAYVREDRSSIAFG-TNKQ--- 341
            ..|....:.:.|| :..|.||.:|.:.:||.|.:..::..|.|:.   :.:::..|. |:|:   
plant   354 VPSSHGFMISSTS-MTNVWLSMEHQAILWCNQLVVQVSHTLLSMV---DSKTNQPFSDTDKRLWV 414

  Fly   342 --RNLQTALS-TF--VKPRRRQQNTVRFGAAG-----NWHE---ERRLVINKYFTNGL------K 387
              |.||:||: :|  :.|...........:.|     :|.:   :|.|.|.......|      :
plant   415 LTRMLQSALAQSFNGMTPMEVSHELPILASKGSTCFLDWRDDALDRDLYIQTSTVTILAMDGRRR 479

  Fly   388 GTFFDLIGLQRQERYRKAAIEALNVDDEDWLFGCSA--------EDNNKTGQLYCEK---ATSLM 441
            ....||:|...:..:    |...|      |..||.        ::.:.:....||:   .||.|
plant   480 WLDIDLLGSNGKNHF----IFVTN------LVPCSGVRLHLWPEKEKSNSNLPVCERVLEVTSKM 534

  Fly   442 HLVQWLP----------NEDREPRSIALLDLHNLRKTYVHWTHLLVRL---------PPSAKRIG 487
            .|:...|          .|...|.::..|...::|    .:..|.:.:         ||.|..:.
plant   535 VLIPAGPAPKQSEPGSQTEQAPPSAVLKLGPEDMR----GFRFLTISVAPREAVSGKPPVAVSMA 595

  Fly   488 ----YN--------------LDIYDPKERVTDIKMPRWYTMA---KLPLINETLQGTLHHRVRIS 531
                :|              |..|..||.......|..|.::   .|.|:..||           
plant   596 VGQFFNPGDGAVEVSSQSMLLSTYWAKEIFLKEDHPLAYNLSFSTSLGLLPATL----------- 649

  Fly   532 EMVDPYQSIRVIVEP--------------LQCINPEYRVTARICVPW--AAGFERFQTLKS---- 576
            .:......|:....|              |:|..|       :.:.|  |:|...|..|.|    
plant   650 SLKTTGCGIKTFGLPDGETGDLDKDKLCKLRCFPP-------VALAWDSASGLHVFANLYSETIV 707

  Fly   577 FDQKPQLYVNVPTLVPRHYNTTLNPVTLELYLDPTCRYRISYEYSYSSALSRLVLEFYGWLPAHL 641
            .|..|.|:          .:.:....|:.|.:||.|.|..|...|..:..||.||.:...:....
plant   708 IDSSPALW----------SSQSSEKTTVMLLVDPHCSYTASVHVSAPAMSSRFVLLYGPQIVGFS 762

  Fly   642 VCVLLIVLRKQVETFYDVGTFRSLRPYVGYLQYTSLYIVTACRLLKKLIISSRVF-------PEP 699
            ..|::..|.:|...:   ....|:.|.:..::| :|.:.:...||..|.:.|.:|       |.|
plant   763 FAVIMFALMRQANQW---DNKLSVPPLLSAVEY-NLEMPSPFLLLAVLPLISSLFYSFLMGQPIP 823

  Fly   700 EPLDYSINVSIVIHCAAIALSLLATLGTWLALTLYGNAFYRLALRITRLSQATSNVMISIMTHLP 764
             ||.....||::.:                   |..|||..               :::|::..|
plant   824 -PLTSFTVVSLICY-------------------LLANAFIS---------------VLTIVSKFP 853

  Fly   765 ITYGILTIATAMGTCSGV--GLLLAFVFYFLMLSNAYKDYLEDFLWQKAANLVRGKPS------A 821
            .....|...|....|..:  ...|||:.:|.:||::       |...||..:::...:      |
plant   854 FQASALVHTTVKSRCQALERNYSLAFLHWFSILSSS-------FFCLKAIRILKLNTTILMTLIA 911

  Fly   822 VT---------------------------------EQEDATEEQNEEQNALKQNDEQKQQQQEEE 853
            ||                                 :::::.:::||.        |:|.:.....
plant   912 VTLVSFVHPALGLFVLLASHALCCHNSMCCIMMASKRKESLDQKNEA--------ERKTRHPSSR 968

  Fly   854 EPEACVGLQNFSFHVT----------LLLMLFVQLLLNAPSSLAWLRSRRHGINLP---DPSLYP 905
            |......|...||..|          ||::..:..|:..||..||.:....|.:.|   |.:|..
plant   969 EDPVSGDLSEKSFVETQADIFNHRHGLLILHLLAALMFVPSLAAWFQRIGTGQSFPWFADSALCV 1033

  Fly   906 SIV---VLASLSLLLQLRAPQKCQGYWMLSIAFYILAGVVLLYC-----QAAIYRLTYVIA 958
            .::   :|.|......||:.....|:.:.....|:|||   .||     :.|.|::.|.||
plant  1034 GVIFHGILNSRPESSILRSFPFFSGHQIRPHHIYLLAG---YYCFFSGLELAPYKVFYAIA 1091

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGAP1NP_572245.1 PGAP1 79..324 CDD:285110 77/293 (26%)
AT3G27325NP_001189986.1 PGAP1 121..396 CDD:369540 77/293 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2698
eggNOG 1 0.900 - - E1_KOG3724
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 147 1.000 Inparanoid score I1743
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004158
OrthoInspector 1 1.000 - - oto3986
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2907
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.820

Return to query results.
Submit another query.