DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGAP1 and her-1

DIOPT Version :9

Sequence 1:NP_572245.1 Gene:PGAP1 / 31487 FlyBaseID:FBgn0029789 Length:980 Species:Drosophila melanogaster
Sequence 2:NP_001024310.1 Gene:her-1 / 179360 WormBaseID:WBGene00001842 Length:175 Species:Caenorhabditis elegans


Alignment Length:31 Identity:12/31 - (38%)
Similarity:16/31 - (51%) Gaps:2/31 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 NVCDSLHQRP--PSVQRMASQDSSARLDNVL 263
            |.|.:|...|  .:..|:.|..|.:.|||||
 Worm   106 NRCKNLMTSPSIDAATRLDSIKSCSLLDNVL 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGAP1NP_572245.1 PGAP1 79..324 CDD:285110 12/31 (39%)
her-1NP_001024310.1 Caenor_Her-1 32..162 CDD:286335 12/31 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S163
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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