DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4119 and Rbm25

DIOPT Version :9

Sequence 1:NP_001284899.1 Gene:CG4119 / 31481 FlyBaseID:FBgn0028474 Length:998 Species:Drosophila melanogaster
Sequence 2:NP_001351344.1 Gene:Rbm25 / 67039 MGIID:1914289 Length:857 Species:Mus musculus


Alignment Length:1068 Identity:354/1068 - (33%)
Similarity:497/1068 - (46%) Gaps:305/1068 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSYPPRAPMPPF----MNTAIPPPHIM---------QNMAKPPRSFRNSATISSQPTVYQ----- 47
            ||:||....||.    :...||||...         ..|...|.|....|.....|||..     
Mouse    20 MSFPPHLNRPPMGIPALPPGIPPPQFPGFPPPVPPGTPMIPVPMSIMAPAPTVLVPTVSMVGKHL 84

  Fly    48 --RPPEPQPQFR------GPIITVFVGNISERVPEALLKRILNACGVVINWKRV-------STFG 97
              |...|..:.:      ||..|||||||||:..:.|::::|..||:|::||||       ..||
Mouse    85 GARKDHPGLKLKENDENCGPTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFG 149

  Fly    98 FCEFDGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNG---------DRSNPV 153
            |||:..|.:.:||:|||.:::|..|||:.|||||.|..::::|.::..||         |....:
Mouse   150 FCEYKEPESTLRALRLLHDLQIGEKKLLVKVDAKTKAQLDEWKAKKKANGNARPETVTNDDEEAL 214

  Fly   154 DEKTE--DEFAIAQMHEFLEEHKHEFEGFDSSSRADLYGSANRNKKTRREEDIKMK--------- 207
            ||:|:  |:.....:...:.|:..|...  .|..:|   |..|.||..::|||..:         
Mouse   215 DEETKRRDQMIKGAIEVLIREYSSELNA--PSQESD---SHPRKKKKEKKEDIFRRFPVAPLIPY 274

  Fly   208 --VLSEN----TLEEEKRNLISSEIGKFR---MRAEEDEHRKELEKEK-EKEKLAASKEKERKKQ 262
              :..|:    .:||:||:|||.||.|||   .:.||::.:||.|::: |||:    :|:||:::
Mouse   275 PLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKER----RERERERE 335

  Fly   263 REMERMSSTSKSGSSSTAAASSSSATATSSTPAADGADMSDKTDKESVAVVIKETVKESKESASS 327
            ||.||                                               :|..:|.:.....
Mouse   336 RERER-----------------------------------------------RERERERERERER 353

  Fly   328 TGRKESSSAAIEITQKERRSDSKETRRR-RSKSRSKDRERERERELRELRDKERERERDRERERE 391
            ...||..      .::||..|...|:.| |.:.|.:||:|||..:..:.|.:.||:.||||||||
Mouse   354 EKEKERE------RERERDRDRDRTKERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERE 412

  Fly   392 RERNEMRERERNEMREREREREREREREEKLLKPVRDTWREKEM-EDELRDRKKAEKKAREKEIA 455
            |||...|||||...||||||||||||||       :|..|::|. |::..:|:|.|:|.||||.|
Mouse   413 RERERERERERERERERERERERERERE-------KDKKRDREEDEEDAYERRKLERKLREKEAA 470

  Fly   456 YQTRLTDWEVREKRKAKENEKYRLKELLRQEERETDAKRLKEFVEDYDDERDDSLYYRGRELQQR 520
            ||.||.:||:||::|.:|.||...:|..|:.|...:|||||||:|||||:|||..||||..||:|
Mouse   471 YQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKR 535

  Fly   521 LAERVREADADSKDREKEAEELAELKSKFFSGEYENPSLEFEKARLEIEKLYEPRILINVNQEPP 585
            |.:|.:|.:||.:||::|.|||.|::.:..:..:.:|..|.::...|.|:..:|:|    .|||.
Mouse   536 LRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAELQRMEQEAERRRQPQI----KQEPE 596

  Fly   586 AAATSSVHQRKQAASAPGEDDEGQKQRQKSQQLDSYDPDMAGTNDDDSISNDDRASMADTASNAS 650
            :.......|.|:.     :.:|..::.::.:|.....|.:.            ..|.|.:.|:||
Mouse   597 SEEEEEEKQEKEE-----KREEPVEEEEEPEQKPCLKPTLR------------PISSAPSVSSAS 644

  Fly   651 GVYAKNNNNDQSLSNSLSRHNSESRDSLAQIHTPTQSAILNDQESGHDAILPSATPPMTMPLISL 715
            |....|...|:|....:..|.:.......:.|.|...                         :||
Mouse   645 GNATPNTPGDESPCGIIIPHENSPDQQQPEEHRPKIG-------------------------LSL 684

  Fly   716 TLG--------NNLKKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNISNTTPSNHAASSGS 772
            .||        |::|:||:....||...:|.|.:..|:|||||||||.::..|.|         .
Mouse   685 KLGASNSPGQPNSVKRKKLPVDSVFNKFEDEDSDDVPRKRKLVPLDYGEDDKNAT---------K 740

  Fly   773 GAANNSSSSNNNNSSSADRQSSAVSAATAAAAAVSQKIAQAFGGGSSGSGSGSGSGSNASGGKNN 837
            |..|.                                                            
Mouse   741 GTVNT------------------------------------------------------------ 745

  Fly   838 GGGSSSSSNNKHNSNSKHGKNEAAASAGSSADAAAANIKKDENGAKVYDEKRRHIKSIIDRIPTQ 902
                                                            :|||:||||:|::|||.
Mouse   746 ------------------------------------------------EEKRKHIKSLIEKIPTA 762

  Fly   903 KEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSPPQSILDDVQM 967
            |.|||.|.||.:.:||.||||:|||||||||||||||.|.|||||:||||:|.|.||||||||.|
Mouse   763 KPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAM 827

  Fly   968 VLDEEAEVFVVKMWRLLIYELDAKKSGL 995
            |||||||||:||||||||||.:|||.||
Mouse   828 VLDEEAEVFIVKMWRLLIYETEAKKIGL 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4119NP_001284899.1 RRM_RBM25 62..136 CDD:240892 39/80 (49%)
PWI 917..988 CDD:214609 60/70 (86%)
Rbm25NP_001351344.1 RRM_RBM25 106..188 CDD:409880 39/81 (48%)
PWI 777..850 CDD:214609 61/72 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836191
Domainoid 1 1.000 288 1.000 Domainoid score I1568
eggNOG 1 0.900 - - E1_KOG2253
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 361 1.000 Inparanoid score I2190
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59586
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003333
OrthoInspector 1 1.000 - - oto92183
orthoMCL 1 0.900 - - OOG6_103133
Panther 1 1.100 - - LDO PTHR18806
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1872
SonicParanoid 1 1.000 - - X3224
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.880

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