DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4119 and rbm25a

DIOPT Version :9

Sequence 1:NP_001284899.1 Gene:CG4119 / 31481 FlyBaseID:FBgn0028474 Length:998 Species:Drosophila melanogaster
Sequence 2:XP_005157015.1 Gene:rbm25a / 568088 ZFINID:ZDB-GENE-090312-142 Length:805 Species:Danio rerio


Alignment Length:1080 Identity:346/1080 - (32%)
Similarity:486/1080 - (45%) Gaps:362/1080 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSYPPR----APMPP---------FMNTA--------------IPPPHIMQNMAKPPRSFRNSAT 38
            ||:||.    |.:||         |..|.              .|||.::...|.|.....|..|
Zfish     1 MSFPPHLNQIAQLPPGISPSQFAGFPTTVPTASPIIQVPVGMMTPPPAVLVQTAVPVVQKLNRDT 65

  Fly    39 ISSQPTVYQRPPEPQPQFRGPIITVFVGNISERVPEALLKRILNACGVVINWKRV-------STF 96
               ..|..:...:......||..|||||||||:..:.|::::|..||:|::||||       ..|
Zfish    66 ---NATRNKDSEDGTSSSTGPTTTVFVGNISEKASDMLVRQLLAKCGLVLSWKRVQGASGKLQAF 127

  Fly    97 GFCEFDGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKE------------QECKNGDR 149
            ||||:..|.:.:||:|||.|:::..|||:.|||||.|..:|.:|.            :|.|:.:.
Zfish   128 GFCEYKEPESTLRALRLLHELQLGDKKLLVKVDAKTKAQLETWKASQRRRNGTPQTGEEAKDEEE 192

  Fly   150 SNPVDE--KTEDEFAIAQMHEFLEEHKHEFEGFDSSSRADLYGSANRNKKTRREEDIKMKVLSEN 212
            ...:||  |..|:.....:...:.|:..|.    |:|..|......:.:|.::|:||     :..
Zfish   193 EEVLDEEMKRRDQMVKGAIDSLIREYSSEL----SASSQDGEAHQRKKRKEKKEDDI-----NAM 248

  Fly   213 TLEEEKRNLISSEIGKFRMRAEEDEHRKELEKEKEKEKLAASKE-KERKKQREMERMSSTSKSGS 276
            .||::||:|||.||.|||     |.|:| ||:|||:|:....|| :||.|:||.|          
Zfish   249 ELEDDKRDLISREISKFR-----DTHKK-LEEEKERERQQIEKERRERDKERERE---------- 297

  Fly   277 SSTAAASSSSATATSSTPAADGADMSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAIEIT 341
                                                                             
Zfish   298 ----------------------------------------------------------------- 297

  Fly   342 QKERRSDSKETRRRRSKSRSKDRERERERELRELRDKERERERDRERERERERNEMRERERNEMR 406
                       :.||.:.|.|:|||||::|    |:|||||||||||||.:|:.  ||:||:..|
Zfish   298 -----------KERRDREREKERERERQKE----REKERERERDRERERTKEKE--REKERSRDR 345

  Fly   407 EREREREREREREEKLLKPVRDTWREKEM-EDELRDRKKAEKKAREKEIAYQTRLTDWEVREKRK 470
            .::|.|.||:.||||.        ||:|. |:|..:|:|.|:|.||||:|||.||.:||:||::|
Zfish   346 SKDRSRSREKNREEKK--------REREEDEEEAYERRKLERKLREKEVAYQERLKNWEIRERKK 402

  Fly   471 AKENEKYRLKELLRQEERETDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREADADSKDR 535
            :::..|...:|..||.|...:|||||||:|||||:|||..||||..||:||.:|.:|.:.|.:||
Zfish   403 SRDYSKETEREDERQREMTKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMELDERDR 467

  Fly   536 EKEAEELAELKSKFFSGEYENPSLEFEKARLEIEKLYEPRILINVNQEPPAAATSSVHQRKQAAS 600
            ::|.:||.|::.:..:..:.:|..|.::...|.||          .|:.|.       :::|...
Zfish   468 KREKDELEEIRQRLLAEGHPDPDAELQRIEEEAEK----------RQKAPL-------KQEQMEE 515

  Fly   601 APGEDDEGQKQRQKSQQLDSYD---PDMAGTNDDDSISNDDR------------ASMADTASNAS 650
            ......|.|::::..|::.|.|   .|.....:::...:|||            .:.|.:.|:||
Zfish   516 VLQLSREEQQRKEVEQEVFSSDNNITDREEEEEEEEKEDDDREVKPCLKPTLRPVTAAASVSSAS 580

  Fly   651 GVYAKNNNNDQSLSNSLSRHNSESRDSLAQIHTPTQSAILNDQESGHDAILPSATPPM--TMPLI 713
            |       |...|:     ..|||....|..|          :.|.|:|      ||.  ..|.|
Zfish   581 G-------NATPLT-----PGSESPHGTASPH----------ENSTHEA------PPTEELRPKI 617

  Fly   714 SLTLGNNLKKKKIEATG------------------VFVNDDDNDENINPKKRKLVPLDYDDNISN 760
            .|:|       |:.|||                  ||...::.:....|||||||||||      
Zfish   618 GLSL-------KLGATGSPKMAPTGRRKALAAVDSVFNKFEEEEVETAPKKRKLVPLDY------ 669

  Fly   761 TTPSNHAASSGSGAANNSSSSNNNNSSSADRQSSAVSAATAAAAAVSQKIAQAFGGGSSGSGSGS 825
                                      |..:|.:.::..|..                     :||
Zfish   670 --------------------------SEEERGALSLDGAEV---------------------TGS 687

  Fly   826 GSGSNASGGKNNGGGSSSSSNNKHNSNSKHGKNEAAASAGSSADAAAANIKKDENGAKVYDEKRR 890
            ..|.|.                                                      :|||:
Zfish   688 RPGGNT------------------------------------------------------EEKRK 698

  Fly   891 HIKSIIDRIPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 955
            ||||:|::|||.|:|||||.||.|.:|:.||:|:|||||||||||||||.|.|||||:||||:|.
Zfish   699 HIKSLIEKIPTVKQELFNYPLDWNMVDTTLMDRRIRPWINKKIIEYIGEEEATLVDFVCSKVMAH 763

  Fly   956 SPPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGL 995
            |.|:.|||||.||||||||||:||||||||||.:|||.||
Zfish   764 STPEGILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4119NP_001284899.1 RRM_RBM25 62..136 CDD:240892 39/80 (49%)
PWI 917..988 CDD:214609 56/70 (80%)
rbm25aXP_005157015.1 RRM_RBM25 87..167 CDD:240892 38/79 (48%)
COG5281 <383..>528 CDD:227606 60/161 (37%)
PWI 725..798 CDD:214609 57/72 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 291 1.000 Domainoid score I1499
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 475 1.000 Inparanoid score I1449
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378934at33208
OrthoFinder 1 1.000 - - FOG0003333
OrthoInspector 1 1.000 - - otm24638
orthoMCL 1 0.900 - - OOG6_103133
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3224
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.870

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