DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4119 and rbm25

DIOPT Version :9

Sequence 1:NP_001284899.1 Gene:CG4119 / 31481 FlyBaseID:FBgn0028474 Length:998 Species:Drosophila melanogaster
Sequence 2:XP_031746171.1 Gene:rbm25 / 407928 XenbaseID:XB-GENE-490152 Length:810 Species:Xenopus tropicalis


Alignment Length:1055 Identity:347/1055 - (32%)
Similarity:489/1055 - (46%) Gaps:307/1055 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSYPPRAPMPPF----MNTAIPPPHIM-------QNMAKPPRSFRNSATISSQPTVYQRPPEPQP 54
            |||||....||.    :...||||...       ..|...|.|..........|||........|
 Frog     1 MSYPPHLNRPPMGIPTLPPGIPPPQFPGFPPPPGTPMIPVPMSLMAPGPTVLVPTVSMVGKHLGP 65

  Fly    55 Q-------------FRGPIITVFVGNISERVPEALLKRILNACGVVINWKRV-------STFGFC 99
            :             ..||..|||||||||:..:.|::::|..||:|::||||       ..||||
 Frog    66 RKDMIGLKNKENDDNSGPTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFC 130

  Fly   100 EFDGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYK-EQECKNG--------DRSNPVDE 155
            |:..|.:.:||:|||.:::|..|||:.|||||.|..::::| .:...||        |..:.|||
 Frog   131 EYKEPESTLRALRLLHDLQIGEKKLLVKVDAKTKAQLDEWKASKRASNGSAKPESAADDEDDVDE 195

  Fly   156 KTE--DEFAIAQMHEFLEEHKHEFE--GFDSSSRADLYGSANRNKKTRREEDIKMKVLSEN---- 212
            .|:  |......:...::|:..|..  ..||.|.      ..:.||.::||......|.|:    
 Frog   196 DTKRRDGIIKGAIEVLIKEYSSELNAPSQDSDSH------PRKKKKDKKEEMSNSVQLQEDINAI 254

  Fly   213 TLEEEKRNLISSEIGKFRMRAEEDEHRKELEKE---KEKEKLAASKE-KERKKQREMERMSSTSK 273
            .:||:||:|||.||.|||     |.|:| ||:|   ||||:....|| :||:::||.||      
 Frog   255 EMEEDKRDLISREISKFR-----DTHKK-LEEEKGKKEKERQEIEKERRERERERERER------ 307

  Fly   274 SGSSSTAAASSSSATATSSTPAADGADMSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAI 338
                                                     :|..:|                  
 Frog   308 -----------------------------------------RERERE------------------ 313

  Fly   339 EITQKERRSDSKETRRRRSKSRSKDRERERERELRELRDKERERERDRERERERERNEMRERERN 403
              .:|||   .||..|.|.:.|:|||:|:|:|:....|||:|:|.||..::|.|.|.:.|:|:|:
 Frog   314 --REKER---EKEKERERDRERNKDRDRDRDRDRDRDRDKDRDRARDHSKDRSRSREKSRDRDRD 373

  Fly   404 EMREREREREREREREEKLLKPVRDTWREK-----EMEDELRDRKKAEKKAREKEIAYQTRLTDW 463
            ..|||:|||||||:||       ||..::|     |.|:|..:|:|.|:|.||||.|||.||.:|
 Frog   374 RDRERDRERERERDRE-------RDREKDKKRDREEDEEEAYERRKLERKLREKEAAYQERLKNW 431

  Fly   464 EVREKRKAKENEKYRLKELLRQEERETDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREA 528
            |:||::||:|.||...:|..|:.|...:|||||||:|||||:|||..||||..||:||.:|.:|.
 Frog   432 EIRERKKAREYEKDAEREEERRRETAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEM 496

  Fly   529 DADSKDREKEAEELAELKSKFFSGEYENPSLEFEKARLEIEKLYEPRILINVNQEPPAAATSSVH 593
            :||.:||::|.|||.|::.:..:..:.:|..|.::...|.|:..:|.   .:..:|.:.....|.
 Frog   497 EADERDRKREKEELEEIRQRLLAEGHPDPDAELQRMEQEEERRRQPP---QIKPQPESEEEEEVK 558

  Fly   594 -QRKQAASAPGEDDEGQKQRQKSQQLDSYDPDMAGTNDDDSISNDDRASMADTASNAS--GVYAK 655
             .|::....|.|::|.:.:       ....|.|...:...|:|:..|.:..::..:.|  |:...
 Frog   559 PMREEKIEEPVEEEELEPK-------PCLKPTMRPISSAPSVSSGSRNATPNSPGDESPCGIIIP 616

  Fly   656 NNNNDQSLSNSLSRHNSESRDSLAQIHTPTQSAILNDQESGHDAILPSATPPMTMPLISLTLGNN 720
            :.|:.:.......|...|....|...::|:|               |:|.               
 Frog   617 HENSPEQQPQEEYRPKIELSLKLGAPNSPSQ---------------PNAA--------------- 651

  Fly   721 LKKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNISNTTPSNHAASSGSGAANNSSSSNNNN 785
             |:||:....||...||.|.:..|:|||||||||.|:                  :.:|:.||.|
 Frog   652 -KRKKLPVDSVFNKFDDEDSDEVPRKRKLVPLDYGDD------------------DKTSAKNNVN 697

  Fly   786 SSSADRQSSAVSAATAAAAAVSQKIAQAFGGGSSGSGSGSGSGSNASGGKNNGGGSSSSSNNKHN 850
            :                                                                
 Frog   698 T---------------------------------------------------------------- 698

  Fly   851 SNSKHGKNEAAASAGSSADAAAANIKKDENGAKVYDEKRRHIKSIIDRIPTQKEELFNYKLDRNE 915
                                               :|||:||||:|::|||.|.|||.|.||.:.
 Frog   699 -----------------------------------EEKRKHIKSLIEKIPTAKPELFAYPLDWSI 728

  Fly   916 IDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSPPQSILDDVQMVLDEEAEVFVVKM 980
            :|:.||||:|||||||||||||||.|.|||||:||||:|.|.||||||||.||||||||||:|||
 Frog   729 VDTTLMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKM 793

  Fly   981 WRLLIYELDAKKSGL 995
            |||||||.:|||.||
 Frog   794 WRLLIYETEAKKIGL 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4119NP_001284899.1 RRM_RBM25 62..136 CDD:240892 39/80 (49%)
PWI 917..988 CDD:214609 59/70 (84%)
rbm25XP_031746171.1 RRM_RBM25 85..167 CDD:409880 39/81 (48%)
PWI 730..803 CDD:214609 60/72 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 261 1.000 Domainoid score I1920
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 326 1.000 Inparanoid score I2437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378934at33208
OrthoFinder 1 1.000 - - FOG0003333
OrthoInspector 1 1.000 - - otm47635
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1872
SonicParanoid 1 1.000 - - X3224
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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