DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pop1 and POP1

DIOPT Version :9

Sequence 1:NP_572236.3 Gene:Pop1 / 31475 FlyBaseID:FBgn0026702 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_014178.1 Gene:POP1 / 855500 SGDID:S000005165 Length:875 Species:Saccharomyces cerevisiae


Alignment Length:898 Identity:180/898 - (20%)
Similarity:290/898 - (32%) Gaps:330/898 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GGRVTLPSHVTTYHYAAEALQEIRNLVADCQETTQRSSKLIFQTLPKHMRRRAMSHHPKRLPRKY 77
            |.::.:...:::..:      |::.|......:...||..|||.||:.:|||..||:.:|:|::.
Yeast    54 GSKLNVDQFISSRQF------EVKQLQLAMHNSKAASSTRIFQALPRKLRRRTASHNVRRIPKRM 112

  Fly    78 RQAHKSQMGKSGNQPV--NGKRPSRK--------------------------------------- 101
            |.....:|.||..|.|  .....|||                                       
Yeast   113 RNRALREMRKSDQQDVLKGSSASSRKAHGLNAKQLYKARMSIKLLRLASKSTSMKLSMPPEVTSS 177

  Fly   102 ---YRRRPKNLMR--------------------------------------EYVRRQRRHVWLET 125
               .|::.|.|.|                                      :|.:||:...||.|
Yeast   178 NCHVRQKIKTLKRMIKESSTANPNIKLLNNRMGSYDCTGVNELAPIPKGRVKYTKRQKHFAWLPT 242

  Fly   126 HIWHAKRFHMVDRWGHRLPYASCDKTYRACYRASAEHC-----LLQDISFYGCVELRGPL----- 180
            |||:|||.||:.|||:::.:|...|.::..:|...:.|     |..|.|:.|.:.::...     
Yeast   243 HIWNAKRSHMMKRWGYQMVWAPTQKCFKLTHRLGGDTCSSDGALCMDSSYIGTIIVKDKSNDSEG 307

  Fly   181 DMLREGFARLTSPQCGLGITARTFLSGRREGSVELFEDGRYPYGALQRASFMWRPRREEEDEKQT 245
            |.|:....:||:.:..|    |.:    |||.| ||:...|.:             .||..|..|
Yeast   308 DFLKSIIGKLTAERANL----RKY----REGQV-LFQGLIYSF-------------NEENGEDST 350

  Fly   246 N-----HTLW-------LWLHPSGAQAVLNQLISVFQLKSTRQQKLPLNEAVTEEKMDVDKIEPV 298
            .     ...|       :.||||....|.|.|:         |.|         ||:.|.... .
Yeast   351 KPLGPCDVFWVQKDTAIIRLHPSIYTQVFNILL---------QHK---------EKLTVQDCR-Y 396

  Fly   299 ELSKETSPGKKNSKKKPEQRPLRFWTKTKAFDPQPSYFNSDGTLHLVLLQREFNRFRLTGPRAQK 363
            .|:..|..|                  .||.:...|...|      ....:.|.:|::    ...
Yeast   397 SLASVTLKG------------------AKALESLASCLRS------TEYSKSFEQFKM----VSM 433

  Fly   364 VLFASLRPHREEELQDKANYCQAALQLSSPAELLSNLVMAHLVVDPR-LQRPKKRTKAVGKMEQP 427
            :...:..|.|          |..|.:                .:||| |..|||    :...::.
Yeast   434 ITDHNALPQR----------CTFAFE----------------AIDPRHLAAPKK----LNDSQRK 468

  Fly   428 PLSAGDLLM---NQPKSL----------PESPLWSKKARERLAKGIMSAHKYDQLREQHAVVPGA 479
            .:::.|:|.   |.|:..          |||...|...:..|.:  :||.:|..|......:...
Yeast   469 TVNSDDILSLHENYPQDEINAVFNELCDPESRTQSYNNQNTLKE--ISARRYKLLTATPNSINKT 531

  Fly   480 PCAF-EQQMQALPVILIQRPGSQDPRYKRLGYGCGWDVIAPAGYGMTLWLTLT----MWGARPGG 539
            ...| |....::|:::|:|..::|           |.|:.|..:.:.||..|.    |:..   |
Yeast   532 TVPFKESDDPSIPLVIIRRLKTRD-----------WIVVLPWFWLLPLWHLLNRIPRMYHI---G 582

  Fly   540 LRELDSVAREAGAEIHLPD-----TLAGVQRAAASADELRARYFRMPPNKRTNYRKLAVVSP--- 596
            ||:...:..| ..:::.||     .|..::.:....:..:.::.|.|..||.|:.|:..:..   
Yeast   583 LRQFQQIQYE-NKQLYFPDDYPFTQLGYIENSFYKKEASKTKWDRKPMGKRINFEKIKDIHNTKL 646

  Fly   597 ----------FTAPWRHL--------------------------------VRD------------ 607
                      |::.||.|                                |||            
Yeast   647 PAYSGEIGDFFSSDWRFLQILRNGIDYLQRNDKTLELMDSKKTGQFNAQGVRDINCVNDVLEFCK 711

  Fly   608 -----WRASFSSASEGSSFYVLRHRQQLEEIVESIR-HRSPLPQTLPDDAIIQIQLQLLSRGHVK 666
                 .:|...|..|.....:.::|:......:||. :.|....|.....||.:...||.|||.|
Yeast   712 DYEAKTKAMSLSIEENIPVALCKNRKCQFRTPDSISVNSSSFSLTFFPRCIIAVSCTLLERGHPK 776

  Fly   667 DNALICLPTAADHKKRWRQLKHNDQAPVHVEPTQPDLNEQLRKELRQSHKLKL 719
            |||.|......| .:.|.||......|                ..|:.|.||:
Yeast   777 DNARIYQVPEKD-LEHWLQLAKGVYRP----------------NGRKDHDLKI 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop1NP_572236.3 POP1 33..178 CDD:284413 54/231 (23%)
POPLD 514..600 CDD:285393 21/107 (20%)
POP1NP_014178.1 POP1 62..299 CDD:399753 54/242 (22%)
POPLD 555..661 CDD:400475 22/120 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343258
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3322
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6514
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004822
OrthoInspector 1 1.000 - - oto100194
orthoMCL 1 0.900 - - OOG6_103108
Panther 1 1.100 - - LDO PTHR22731
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R951
SonicParanoid 1 1.000 - - X3405
TreeFam 00.000 Not matched by this tool.
109.810

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