DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pop1 and Pop1

DIOPT Version :9

Sequence 1:NP_572236.3 Gene:Pop1 / 31475 FlyBaseID:FBgn0026702 Length:857 Species:Drosophila melanogaster
Sequence 2:NP_001124022.1 Gene:Pop1 / 315045 RGDID:1308609 Length:1044 Species:Rattus norvegicus


Alignment Length:1022 Identity:291/1022 - (28%)
Similarity:443/1022 - (43%) Gaps:263/1022 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LPSHVTTYHYAAEALQEIRNLVADCQETTQRSS-KLIFQTLPKHMRRRAMSHHPKRLPRKYRQAH 81
            :|.::|...:|.....||..::   :..||:|| .|:|||||:|||||||||:.|||||:.::..
  Rat    97 IPKYITASTFAQARAAEISAML---KAVTQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEMA 158

  Fly    82 KSQMGKSGNQ-PVNGKRPSRKYRRRPKNLMREYVRRQRRHVWLETHIWHAKRFHMVDRWGHRLPY 145
            |.:..|:.:| ..:.|....|.||...|...|:.|||::::|||||||||||||||.|||:.|..
  Rat   159 KKEAEKAAHQKKEHSKNKCHKARRCHINRTLEFNRRQQKNIWLETHIWHAKRFHMVKRWGYCLGE 223

  Fly   146 ASCDKTYRACYRASAEHCLLQDISFYGCVELRGPLDMLREGFARLTSPQCGLGITARTFLSGRRE 210
            ....|::||||||..:.|||||:|:|.|:||:|..:.:.:..:::.|...||...|...|||:|:
  Rat   224 RPTAKSHRACYRAMTDLCLLQDLSYYCCLELKGKEEEILKALSQMCSIDTGLTFAAVHCLSGKRQ 288

  Fly   211 GSVELFEDGRYPYGALQRASFMWRPRR---EEEDEKQTNHTLWLWLHPSGAQAVLNQLISVFQLK 272
            ||:.|:...:||...|...:|:|:.|.   :..:|:|    ||:||||:...|||.      ::|
  Rat   289 GSLMLYRANKYPRDMLGPVTFIWKSRETPGDASEERQ----LWIWLHPTLKLAVLE------EIK 343

  Fly   273 STRQQKLPLNEAV-------TEEKMDV------DKIEPVELSKETSPGKKNSKKKPEQRPLRFWT 324
            :|.|...|:..:|       |..:.|:      |||           |||. |::.:....|...
  Rat   344 TTCQCSEPVKPSVCVPAPLLTPAQEDIQAGLADDKI-----------GKKR-KRRDDGENARRAK 396

  Fly   325 KT---KAFDP-QPSYFNSDGTLHLVL-LQREFNRFRLTGPRAQKVLFASLRP---HREEELQDKA 381
            ||   ...|| ||..:.|..|..:|. |..|.|||||.||.:..:|.::||.   ||.||..::.
  Rat   397 KTIGDGTGDPCQPRSWLSPTTGIVVSDLTMEMNRFRLVGPLSHCILTSALRAAPVHRGEEDAEET 461

  Fly   382 NY------C------------QAALQL----SSPAELLSNLVMAHLVVDPRLQRPKKRTKAVGKM 424
            .:      |            :|..||    |||||:.:..::...|.|||:..|.:|.:|:...
  Rat   462 PHGWWTDTCRSPHGLSLHQRQEAVFQLLGGISSPAEIPAGTILGLTVRDPRVNLPPQRCRALPDP 526

  Fly   425 EQ----------------------PPLS--AGD---------LLMNQPKSLPESPLWSKKARERL 456
            |:                      .|||  ..|         ||...|.....|.:|::...:.:
  Rat   527 ERYHVSEFICEEGMCTSSWSCAHWKPLSDHTDDPDNEQVKQLLLEGVPVECAHSFIWNQDICQSV 591

  Fly   457 AKGIMSAHKYDQLREQHAVVPGAPCAFEQQMQALPVILIQRPG---SQDPRYKRLGYGCGWDVIA 518
            .:..:.....:::|.: .:|||:......:...:|::|||:||   .:|    |||:|.|||::.
  Rat   592 TENKIVDQDLNRMRSE-LLVPGSQLVLGARESKIPILLIQQPGKVTGED----RLGWGSGWDILL 651

  Fly   519 PAGYGMTLWLTLTMWGARPGGLRELDSVAREAGAEIH------------LPDTLAGVQRAAASAD 571
            |.|:||..|:.....|||.|||:|         |.:|            .||..|||..|...|.
  Rat   652 PKGWGMAFWIPFIYRGARVGGLKE---------AAVHSQYKRSPNVPGDFPDCRAGVLFAEDQAK 707

  Fly   572 ELRARYFRMPPNKRTNYRKLAVVSPFTAPWRHLVRDWRASFS----------------------- 613
            :|..:|.|.||.||.||.||..::||..||..|.|||.:...                       
  Rat   708 DLLEKYQRRPPAKRPNYVKLGTLAPFCCPWEQLTRDWESRIQTQEAAVIDSVPGAQETDPRRLGV 772

  Fly   614 -----------------------------------------------SASEGSSFYVLRHRQQLE 631
                                                           :|:.||...|:|.|:.|:
  Rat   773 PCVPKETCQLSNEASIAENQPRKPEVTGCQAQAGTEVALEQNASEDHAAATGSQLCVVRSRKLLK 837

  Fly   632 EI------VESIRH----------RSPLPQTLPD--DAIIQIQLQLLSRGHVKDNALICLPTAAD 678
            ::      ...:|.          |......|.|  .|::.:.|.||.:|..:.:.:||:|:..|
  Rat   838 QLSSWCGPSSEVRRAPCRGQQELTRKACLSILADFPRALVWVSLSLLKKGSPEPHTMICVPSKED 902

  Fly   679 -HKKRWRQLKHNDQAPVHVEPTQPDLNEQLRKELRQSHKLKLKRLRSRRVREKRRLQETATKRVH 742
             .:....|..|......|.:|.:               .|.||. :.::.:|||:..|....:..
  Rat   903 LFQLSQDQCYHGPCESRHSDPFK---------------SLILKE-KEKKKKEKRQDGEQGASKGQ 951

  Fly   743 IRPANTAHLVRGQLQEMCRLW---LPTDPAELRDSVRRQCSRQVFGYVSTAGFSFTEALVCAVGY 804
            ...|.||    ||...:..||   ||        .:...|||.:.|:|:...||.......|:|:
  Rat   952 AAGAPTA----GQEARIQGLWSGPLP--------GLTSHCSRPLLGFVTHGDFSMAVGCGEALGF 1004

  Fly   805 VTPAG-LQQLIEELPASKGNRKQPPLMCLVRDADSRDYRWASFQVNL 850
            |:..| |:.|..:..|.:|       :.|:|...|..||:|...:.:
  Rat  1005 VSVTGLLEMLSSQSAAMRG-------LVLLRPPTSLQYRFARVTIEV 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pop1NP_572236.3 POP1 33..178 CDD:284413 74/146 (51%)
POPLD 514..600 CDD:285393 36/97 (37%)
Pop1NP_001124022.1 POP1 106..256 CDD:284413 74/151 (49%)
POPLD 647..736 CDD:285393 32/176 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339323
Domainoid 1 1.000 99 1.000 Domainoid score I6954
eggNOG 1 0.900 - - E1_KOG3322
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41000
Inparanoid 1 1.050 361 1.000 Inparanoid score I2132
OMA 1 1.010 - - QHG50054
OrthoDB 1 1.010 - - D341931at33208
OrthoFinder 1 1.000 - - FOG0004822
OrthoInspector 1 1.000 - - oto98428
orthoMCL 1 0.900 - - OOG6_103108
Panther 1 1.100 - - LDO PTHR22731
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3405
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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