DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mlc-c and myl3

DIOPT Version :9

Sequence 1:NP_001245533.1 Gene:Mlc-c / 31474 FlyBaseID:FBgn0004687 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_989012.1 Gene:myl3 / 394608 XenbaseID:XB-GENE-946570 Length:188 Species:Xenopus tropicalis


Alignment Length:154 Identity:69/154 - (44%)
Similarity:104/154 - (67%) Gaps:6/154 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TAHVKQTFTTLEEFQEAFNLFDN--RGDGKIQLSQVGECLRALGQNPTESDVKKCTHQLKPDE-- 65
            |..::.:...:|||:|||:|||.  :.:.||...|.|:.|||||||||.::|.|...:.|.:|  
 Frog    34 TVTIEFSADQIEEFKEAFSLFDRTPKCEQKITYGQCGDVLRALGQNPTNAEVLKVLGKPKAEELS 98

  Fly    66 --RISFEVFLPIYQAISKARSGDTADDFIEGLRHFDKDASGYISSAELRHLLTTLGEKLTDEEVE 128
              .:.|:.|||:.|.|||::...|.:||:||||.|||:.:|.:..||:||:|.||||::|:|||:
 Frog    99 LKLMDFDTFLPMLQHISKSKEKGTYEDFVEGLRVFDKEGNGTVMGAEIRHVLATLGERMTEEEVD 163

  Fly   129 QLLANMEDQQGNINYEEFVRMVMS 152
            :||...||..|:||||.|.:.:::
 Frog   164 RLLQGQEDPNGHINYEAFAKYILA 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mlc-cNP_001245533.1 PTZ00184 14..152 CDD:185504 68/143 (48%)
myl3NP_989012.1 PTZ00184 37..188 CDD:185504 68/151 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 151 1.000 Inparanoid score I4246
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1470794at2759
OrthoFinder 1 1.000 - - FOG0000359
OrthoInspector 1 1.000 - - otm47740
Panther 1 1.100 - - LDO PTHR23048
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X268
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

Return to query results.
Submit another query.