DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP5A and RGD1

DIOPT Version :9

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_009819.1 Gene:RGD1 / 852563 SGDID:S000000464 Length:666 Species:Saccharomyces cerevisiae


Alignment Length:417 Identity:83/417 - (19%)
Similarity:157/417 - (37%) Gaps:78/417 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LANARDGSYFVRRSPQSDGYYTLSLRFNKRPKHYKLLYKPGVGHYLRGQDKR------FDTVHDM 154
            ::|.||...|:.:..|: |.::|.:..|..|..||  ..|.:.|   ||..:      .|...:.
Yeast   290 VSNERDLYSFLNKYNQT-GKHSLLINKNLIPVSYK--KHPSMNH---GQKNKSPPKFAVDPSRNS 348

  Fly   155 VADGLINFHMQLHASPIIQQINQ--QTKNCYQQSPYMTLNGRK---------LRALSNELG---- 204
            :...:|:.|   :.||.:...:.  ...|....|...:||..|         :.:.||..|    
Yeast   349 IPKRMISTH---NESPFLSSSSNTAAVPNANLNSATPSLNTNKQLPPTMASSISSTSNAAGAMSP 410

  Fly   205 --KAAAKESKESPAEEKEQKQEEPPPPAVDPMPLVYEKPHHFKVHTFKGLNWCEFCANFLWGFTA 267
              .....::..|..:..:.....|..|......|..::|                          
Yeast   411 SSSIVTSDTTSSITKTLDPGNNSPQIPEELINSLDSDRP-------------------------- 449

  Fly   268 QGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVFGTDLTTMVQLEPHHQIPFVVRRCVEEVEAR 332
                      ::|.:.:..:||....:.|    .||..|.::::.| ...:|.:||:|:..::..
Yeast   450 ----------ISHIQTNNNMPPGVQKNFK----TFGVPLESLIEFE-QDMVPAIVRQCIYVIDKF 499

  Fly   333 GMLQEGIYRVSGFADEIEALKLALDREGEKTDM----SETAYGNVNVIAGTLKLYLRLLPVPLIT 393
            |:.||||||.|....::..||..:|::.....|    ...:..::.::...||.:...||..::.
Yeast   500 GLDQEGIYRKSANVLDVSKLKEEIDKDPANISMILPSKPHSDSDIYLVGSLLKTFFASLPDSVLP 564

  Fly   394 FQAYPSFMAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKRVASHYAVNKMNEHNLATV 458
            ...........:......::..|...:..||.|.:..|:.::.|||||.:|.|.|:||...|..:
Yeast   565 KALSSEIKVCLQIEDPTTRKNFMHGLIYNLPDAQYWTLRALVFHLKRVLAHEAQNRMNLRALCII 629

  Fly   459 FAPTLI-ATPQHMTNLTEEIFMLSSLI 484
            :.||:. |.|....::..:|..:..|:
Yeast   630 WGPTIAPANPDDANDVNFQIMAMEVLL 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215 18/75 (24%)
C1_1 242..294 CDD:278556 3/51 (6%)
RhoGAP_chimaerin 302..491 CDD:239837 46/188 (24%)
RGD1NP_009819.1 F-BAR_Rgd1 39..268 CDD:153336
RhoGAP_fRGD1 470..663 CDD:239863 46/188 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342068
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3050
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001164
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.790

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