DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP5A and SYDE2

DIOPT Version :9

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_016857972.1 Gene:SYDE2 / 84144 HGNCID:25841 Length:1262 Species:Homo sapiens


Alignment Length:592 Identity:125/592 - (21%)
Similarity:197/592 - (33%) Gaps:203/592 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 PLPPAKSTAEAVEANNLAGRLYGSEYHGLMGH-------LEAEQLLANARDGSYFV--------- 106
            |:.||.|| |.|:           :|...:||       :|...:|.:...||..:         
Human   639 PIHPAHST-EFVQ-----------QYKQKLGHKTQEGIMVEDSPMLKSPFAGSGILAATNSTELG 691

  Fly   107 -------RRSPQSDG----------------YYTLSLRFNKRPKHYKLLYKPGVGHYLRGQD--- 145
                   ..||...|                ...||::..|.|:..:.|...|..:|:...|   
Human   692 IMEPSSPNPSPVKKGSSINWSLPDKIKSPRTVRKLSMKMKKLPEFSRKLSVKGTLNYINSPDNTP 756

  Fly   146 --KRFD--TVH--DMVADG----------LINFHMQLHASPIIQQINQQTKNCYQ---------- 184
              .:::  .||  |::..|          :..:|:....|   .|.:.|.||...          
Human   757 SLSKYNCREVHHTDILPSGNTTTAAKRNVISRYHLDTSVS---SQQSYQKKNSMSSKYSCKGGYL 818

  Fly   185 ---QSPYMTLNGRKLRALSNELGKAAAKESKESPAEEKE-------------------------- 220
               .||.:|....| ....|:.||  .||...:...:.|                          
Human   819 SDGDSPELTTKASK-HGSENKFGK--GKEIISNSCSKNEIDIDAFRHYSFSDQPKCSQYISGLMS 880

  Fly   221 ---QKQEEPPPPAVD--------------------------------PMPLVYEKPHHFKVHTFK 250
               ...|:..||.:|                                ...:..|...|.|:..|.
Human   881 VHFYGAEDLKPPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFS 945

  Fly   251 GLNWCEFCANFLWGFTAQGVKCEAC--GFV----------AHSKCSELVPPKCV----------- 292
                        |..|.:  |...|  |.|          .|....:|.|...:           
Human   946 ------------WEPTPR--KNRVCCHGTVVLPTLFRVTKTHQLAVKLEPRGLIYVKVTLMEQWE 996

  Fly   293 -----PDLKRIRGVFGTDLTTMVQLEP-HHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEA 351
                 .|:.:...:||.|:..:|:.|. ...:|.::::|:.|:|.||....|:||:.|.|...:.
Human   997 NSLHGLDINQEPIIFGVDIQKVVEKENIGLMVPLLIQKCIMEIEKRGCQVVGLYRLCGSAAVKKE 1061

  Fly   352 LKLALDREGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAY----------PSFMAAGRT 406
            |:.|.:|:.:...:.|..|.::|||.|.||.|||.||.||||.|.|          |..|::...
Human  1062 LREAFERDSKAVGLCENQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSNGC 1126

  Fly   407 GKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLIATPQHMT 471
            .......:...:.:..||....:.|:.:|:|||.|||::.||||...|||..|.|.|::..|..:
Human  1127 ENDPGDSKYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLSQRQEPS 1191

  Fly   472 NLTEEIF 478
            .....:|
Human  1192 THNNRVF 1198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215 23/148 (16%)
C1_1 242..294 CDD:278556 12/79 (15%)
RhoGAP_chimaerin 302..491 CDD:239837 62/188 (33%)
SYDE2XP_016857972.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1300981at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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