DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP5A and myo9b

DIOPT Version :9

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_005171391.1 Gene:myo9b / 560956 ZFINID:ZDB-GENE-030131-938 Length:1974 Species:Danio rerio


Alignment Length:385 Identity:91/385 - (23%)
Similarity:164/385 - (42%) Gaps:61/385 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 YYTLSLRFNKRPKHYKLLYKPGVGH--YLRGQDKRFDTVHDMVADGLINFHMQLHAS--PIIQQI 175
            ::|.:.:|.:..|....:..|.:|:  .:.|..|:.|::..           :..||  |::..:
Zfish  1433 FFTATTQFRETIKSMYSISNPSIGYKVLMSGYQKKVDSLAG-----------KKKASEVPLVVNL 1486

  Fly   176 NQQTKNCYQQSPYMTLNGRKLRALSNELGKAAAKESKESPAEEKEQKQEEPPPPAVDPMPLVYEK 240
            .|.           .|:|    .:..||.:..|:..|......::.|:|..|     ..||    
Zfish  1487 FQS-----------VLDG----FIRGELKRIDAEPCKVKERNRRKSKREAHP-----DSPL---- 1527

  Fly   241 PHHFKVHTFKGLNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPD-LKRIRGV--- 301
            .|.|..:....:..|:.|.:::||. .:...|.:|..|.|.||...:...|... :::..|.   
Zfish  1528 GHLFSTYQVTIMQSCDQCTSYIWGM-EKAFMCSSCKMVCHKKCLSKITINCTAHYIRKKEGEHTL 1591

  Fly   302 -FGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALDREGEKTDM 365
             ||..|..:|...  ..:|||:.:.:..||..|:..|||||.||.|...:.|...|:::.....:
Zfish  1592 HFGVPLCALVHAA--DSVPFVLEQMLVHVEMNGLYTEGIYRKSGAACRAKELHQKLEKDPHTVSL 1654

  Fly   366 SETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVRRLPPAHHSC 430
            ....   ::.:.|.:|.:||.||.||:|:..|..|:.|....:.:|:.:.:...:..||.::.|.
Zfish  1655 DTYP---IHTVTGLVKQWLRELPDPLMTYSLYNDFLYAVDLPETSERLRAVYRKLEELPSSNIST 1716

  Fly   431 LQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLIATPQ-----------HMTNLTEEIFM 479
            |:.::.||.:||.....|:|:..:||.||||.::..|.           :.|.|..||.:
Zfish  1717 LERLIFHLVKVAKEEEHNRMSADSLAIVFAPCILRCPDSSDPLLSMKDINKTTLCVEILI 1776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215 8/52 (15%)
C1_1 242..294 CDD:278556 13/51 (25%)
RhoGAP_chimaerin 302..491 CDD:239837 54/189 (29%)
myo9bXP_005171391.1 UBQ 13..110 CDD:294102
MYSc 147..974 CDD:214580
MYSc_Myo9 159..965 CDD:276836
C1 1529..1577 CDD:237996 12/48 (25%)
RhoGAP 1593..1778 CDD:295372 54/189 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1453
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.