DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP5A and Arhgap22

DIOPT Version :10

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_038950392.1 Gene:Arhgap22 / 306279 RGDID:1307237 Length:722 Species:Rattus norvegicus


Alignment Length:258 Identity:81/258 - (31%)
Similarity:123/258 - (47%) Gaps:42/258 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 NWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVFGTDLTTMVQLEPHHQ 317
            :|.:.....:|.....|.          |:.|...|   |..|.  .|:||..|...|    ||:
  Rat   141 DWVQAIRRVIWAPLGGG
T----------SRSSHAHP---VEPLS--TGIFGQRLEDTV----HHE 186

  Fly   318 -------IPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALDREGEKTDMSETAYGNVNV 375
                   .|.:|.:||:.:..||:.:||::|:.|.|:.:..|:.:.|. |||.....|.  :|:.
  Rat   187 RKFGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDC-GEKPLFDSTT--DVHT 248

  Fly   376 IAGTLKLYLRLLPVPLITFQAYPSFMAAGR--TGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHL 438
            :|..||||||.||.|:|.|..|..|::..:  |..:.|....:|:.|..||.|:::.|:|:...|
  Rat   249 VASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTVELAKQVSNLPQANYNLLRYICRFL 313

  Fly   439 KRVASHYAVNKMNEHNLATVFAPTLIATPQHMTNLTEEIFMLSSLITHCKTI--------FAT 493
            ..|.:|..||||:..||||||.|.:: .||....:|  |...:||:.|..|:        |||
  Rat   314 DEVQAHSDVNKMSVQNLATVFGPNIL-RPQVEDPVT--IMEGTSLVQHLMTVLIRKHGQLFAT 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215
C1_CHN 241..293 CDD:410356 6/39 (15%)
RhoGAP_chimaerin 302..491 CDD:239837 69/205 (34%)
Arhgap22XP_038950392.1 PH-like 42..157 CDD:473070 2/15 (13%)
RhoGAP_ARHGAP22_24_25 173..371 CDD:239855 70/207 (34%)
DUF4670 <388..>703 CDD:464815
SMC_prok_B <614..>704 CDD:274008
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.