DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP5A and Arhgap23

DIOPT Version :10

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_063126213.1 Gene:Arhgap23 / 303501 RGDID:1309742 Length:1506 Species:Rattus norvegicus


Alignment Length:333 Identity:83/333 - (24%)
Similarity:134/333 - (40%) Gaps:67/333 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 IIQQINQQTKNCYQQSPYMTLN---GRKLRALSNELGKAAA---KESKESPAEEKEQKQEEPPPP 229
            |.:::|...|..:...|....:   .|.|..|.:|..|..|   ..:::.||..||.....|..|
  Rat   849 ISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQTAVRGLRTQDQPAGSKEDSVTTPKTP 913

  Fly   230 AVDPMPLVYEKPHHFKVHTFKGLNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPD 294
                                             ||.          ..:..:|       |..| 
  Rat   914 ---------------------------------WGI----------NIIKKNK-------KAAP- 927

  Fly   295 LKRIRGVFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALDRE 359
                 ..||..|........:.::|.:|..|...|||||:...|||||.|....:.:|:..|:|.
  Rat   928 -----RAFGIRLEDCQPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRG 987

  Fly   360 GEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVRRLP 424
            ....::.:..:.::|||:..||.:.|.||.||.|...|..|:.|.|.....|:.:.:.:.:|.||
  Rat   988 PSDINLQDERWQDLNVISSLLKAFFRKLPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIRDLP 1052

  Fly   425 PAHHSCLQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLIATPQH-----MTNLTEEIFMLSSLI 484
            ..::..|::::.|||.:|.|...|||...|||.||.|||:.|.:.     :|::.:...::.:||
  Rat  1053 GHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLI 1117

  Fly   485 THCKTIFA 492
            .|....|:
  Rat  1118 QHSDWFFS 1125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215
C1_CHN 241..293 CDD:410356 4/51 (8%)
RhoGAP_chimaerin 302..491 CDD:239837 61/193 (32%)
Arhgap23XP_063126213.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.