DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP5A and rga3

DIOPT Version :9

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_594871.1 Gene:rga3 / 2542306 PomBaseID:SPAC29A4.11 Length:969 Species:Schizosaccharomyces pombe


Alignment Length:594 Identity:133/594 - (22%)
Similarity:223/594 - (37%) Gaps:151/594 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 NTGGSGGVGGAPEPSSPVQKVWKPEL-----YKLQLEAPAPCPLRCQRTLPLPPAKSTAEAVEAN 72
            |.||......:...|...|:...|.|     |.|.....:..|.:.:|...:...:...|.:.| 
pombe   405 NGGGHKSFRHSHSLSETSQQTLVPSLGSNGEYHLPTNDHSSTPAQSERDSDVEELREQLENLTA- 468

  Fly    73 NLAGRLYGSEYHGLMGHLEAEQLLANARDGSYFVRRSPQSDGYYTLSLR-----FN--------- 123
             |..:|             :|:|.::..|.|.|: |:...|...:..|.     |:         
pombe   469 -LTKKL-------------SERLSSSTFDNSKFI-RTEDKDTVRSAKLEICEKFFSFADVTDDPT 518

  Fly   124 -KRPKHYKLL-------------YKPGVGHYLRGQDKRFDTVHDM-------------------- 154
             |.|||..|:             |...:.:.|..:::..|..:::                    
pombe   519 LKDPKHQDLVAAANAYMAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLE 583

  Fly   155 VADGLINFHMQL-HASPIIQQIN-QQTKNCYQQSPYMTLNGRKLRALSNELGKAAAKESKESP-- 215
            :||...|...|: |..|...|.| :.|.....::...::|  .|.|:|:..|:::.:....||  
pombe   584 LADLNNNLVKQIQHRVPPENQSNLEHTITTSSKNTTSSIN--PLTAVSSNSGQSSGRPGPLSPNL 646

  Fly   216 ----------------AEEKEQKQEEP------PPPAVDPMPLVYEK---PHHFKVHTFKGLNWC 255
                            .:.::..::.|      ...:.||:....::   .|.|.|:.....:.|
pombe   647 NVTTRIDIKGKKGSMHLQPRDVNRKVPFKSMHTKSKSADPVVGNEDRTQCDHVFHVNAIFKPSRC 711

  Fly   256 EFCANFLWGFTAQGVKCEACGFVAHSKC--------------SELV---------------PPKC 291
            ..|:..:||   ..::|..|....||:|              ||.|               ||..
pombe   712 YICSESVWG---SELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSENSKWMPEMPTRMPPPGP 773

  Fly   292 VPDLKRIRGVFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLAL 356
            .|.:      ||..|...:::| ...:|.|:..||..|:|.|:..|||||:||.|.::..|   :
pombe   774 SPTM------FGRSLENQLKIE-GSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVL---V 828

  Fly   357 DREGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVR 421
            |.....:...|....::......||.||..||.|:|....|...:.|.:..|:.|:.:.:.|.::
pombe   829 DEFENGSIRMEHLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMK 893

  Fly   422 RLPPAHHSCLQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLIATP------QHMTNLTEEI-FM 479
            .|.|||.|..::::.||.||..|...|.||..|::|||||||:...      ||.|..:..: ||
pombe   894 TLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLMRDKVNRFDLQHATKKSTALQFM 958

  Fly   480 LSSL--ITH 486
            |.::  |.|
pombe   959 LDNVDKILH 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215 21/138 (15%)
C1_1 242..294 CDD:278556 17/80 (21%)
RhoGAP_chimaerin 302..491 CDD:239837 64/194 (33%)
rga3NP_594871.1 LIM 18..74 CDD:214528
LIM 78..128 CDD:259829
C1 698..743 CDD:237996 12/47 (26%)
RhoGAP 791..962 CDD:214618 58/173 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 97 1.000 Domainoid score I1887
eggNOG 1 0.900 - - E1_KOG1453
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001164
OrthoInspector 1 1.000 - - mtm9312
orthoMCL 1 0.900 - - OOG6_104322
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1094
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.740

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