DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP5A and pac-1

DIOPT Version :10

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_498877.4 Gene:pac-1 / 176201 WormBaseID:WBGene00015418 Length:1605 Species:Caenorhabditis elegans


Alignment Length:379 Identity:99/379 - (26%)
Similarity:150/379 - (39%) Gaps:93/379 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 QQINQQTKNCYQQSPYMTLN-----------------GRKLRALSNE--------LGKAAAKESK 212
            ||..|||...:||    |:|                 |....|.|..        :.:..||.|:
 Worm   789 QQQQQQTNQKHQQ----TVNELSAGIVSHLPTSKSFGGLSTTASSTTENAKNRLIMHRYIAKNSQ 849

  Fly   213 -ESPAEEKEQKQEEPP---PPAVDPMPLVYEKPHHFKVHTFK----------------------G 251
             :||...|  |.|..|   |.:...|.......||   |:.:                      |
 Worm   850 LQSPTANK--KMETDPSTVPSSSQTMATTSSSFHH---HSSQAGPSRDIENGEAPTATATTPKSG 909

  Fly   252 LNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVFGTDLTTMVQLEPHH 316
            ..|.:..|      ..||   ...|....|..|:.......|  :.:.||...|..| ...|.| 
 Worm   910 RKWKKSKA------AKQG---SGGGSSGSSSGSQQQGAAGAP--QPVLGVRIADCPT-GSCEDH- 961

  Fly   317 QIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALDREG-EKTDMS-----ETAYGNVNV 375
             :|.:|:.||..:|..||...||||:.|....:.|||.:|...| :..|:|     :..:.:|||
 Worm   962 -VPMIVQACVCVIETYGMDTVGIYRIPGNTAAVNALKESLSNRGFDSVDLSKVESLDPRWRDVNV 1025

  Fly   376 IAGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKR 440
            ::..||::||.||.||:|.:.||.|:.|.|......:...:...:|:||..|:..|::::.||..
 Worm  1026 VSSLLKMFLRKLPEPLLTDKLYPFFIDANRISTHHNRLHKLRNLLRKLPRPHYDTLRFLIVHLSE 1090

  Fly   441 VASHYAVNKMNEHNLATVFAPTLIATPQHMTNLTEEIFMLSSLITH----CKTI 490
            :..|..||||...|||.:|.|:::.....         .:::::||    ||.|
 Worm  1091 ITKHSDVNKMECRNLALMFGPSIVRPSDD---------NMATMVTHMSDQCKII 1135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215
C1_CHN 241..293 CDD:410356 11/73 (15%)
RhoGAP_chimaerin 302..491 CDD:239837 62/199 (31%)
pac-1NP_498877.4 PH_ARHGAP21-like 613..728 CDD:269955
RhoGAP_ARHGAP21 945..1146 CDD:239860 64/203 (32%)
Blue background indicates that the domain is not in the aligned region.

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