DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP5A and arhgap15

DIOPT Version :9

Sequence 1:NP_727007.1 Gene:RhoGAP5A / 31473 FlyBaseID:FBgn0029778 Length:494 Species:Drosophila melanogaster
Sequence 2:XP_017952790.2 Gene:arhgap15 / 100485536 XenbaseID:XB-GENE-6038823 Length:550 Species:Xenopus tropicalis


Alignment Length:506 Identity:112/506 - (22%)
Similarity:211/506 - (41%) Gaps:110/506 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QKVWKP---------------------ELYKLQLEAPAPCPLR-----------CQRTLPLPPAK 63
            ||.|||                     |.:....:.|....:|           ||       ||
 Frog    69 QKTWKPPRSAPPVPPKNNITALSETCNETFDSDAKDPGAVQMRIRNANLKLERLCQ-------AK 126

  Fly    64 STA--EAVEANNLAGRLYGSEYHGLMGHLEAEQLLANARDGSYFVRRSPQSDGYYTLSLRFNKRP 126
            |..  ||.:..:...|.:..::  ::....:|.:|.| |:...|:.::       .::.:..|..
 Frog   127 SLVLDEATKPISRHRRNHSQQF--VLDTSGSENILVN-RNKEGFLNKT-------KIAEKGKKLR 181

  Fly   127 KH----YKLLYKPGVGHYLRGQDKRFDTVHDMVADGLINFHMQLHASPIIQQINQQT--KNCYQQ 185
            |:    |.:|..|.:..|...:|:....:........|:..     ...::..|:::  ||.:| 
 Frog   182 KNWVTSYTVLSGPKLEFYKDAKDQTASDLRSSTKQERIDLR-----GASVEWANEKSSRKNVFQ- 240

  Fly   186 SPYMTLNGRK--------------LRALSNELGKAAAKESKESPAEEKEQKQEEPPPPAVDPMPL 236
              ..||:|.:              .||:.|.: .:..:|.|..|.....:|...        :.|
 Frog   241 --ITTLSGNEFLFQSDADITVQEWFRAIRNTI-DSLGREKKSPPLCGNIEKTSN--------IEL 294

  Fly   237 VYEKPHHFKVHTFKGLNWCEFCANFLWGFTAQ--GVKCEACGFVAHSKCSELVPPKCVPDLKRIR 299
            ::.:..:.|.|..:......|..|:....|::  .||.....|::..           |.||.::
 Frog   295 LHLEGENTKEHKHEQRKSLIFKLNYSASDTSERNRVKTRLKKFISRR-----------PSLKTLQ 348

  Fly   300 -------GVFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALD 357
                   .|||..|.|:.:.| :..:|..|.:|:|.||.|||..:|||||||....|:.|:..::
 Frog   349 EKGIIKDQVFGCHLETLCKRE-NETVPRFVTQCIEAVEKRGMDADGIYRVSGNLSTIQKLRFIVN 412

  Fly   358 REGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVRR 422
            :| ||.::.::.:.:::|:.|.||::.|.||.||..::.:..|:.|.:..:...:.:.:.:.|..
 Frog   413 QE-EKLNLDDSQWDDIHVVTGALKMFFRELPEPLFPYRFFEQFVEAIKLQESHLRVKALRDLVWN 476

  Fly   423 LPPAHHSCLQYMLEHLKRVASHYAVNKMNEHNLATVFAPTLIATPQHMTNL 473
            ||||:.:.::.:.|||:::.:..:||.|:..:|..||.|||:.....|.|:
 Frog   477 LPPANRNTMKALFEHLRKIVAKASVNLMSTQSLGIVFGPTLLRPESDMGNM 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP5ANP_727007.1 SH2_a2chimerin_b2chimerin 75..166 CDD:198215 14/94 (15%)
C1_1 242..294 CDD:278556 8/53 (15%)
RhoGAP_chimaerin 302..491 CDD:239837 56/172 (33%)
arhgap15XP_017952790.2 PH_ARHGAP9-like 164..272 CDD:270053 19/123 (15%)
RhoGAP_ARHGAP27_15_12_9 358..544 CDD:239868 56/172 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1300981at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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