DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsx1 and HDG1

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_191674.1 Gene:HDG1 / 825287 AraportID:AT3G61150 Length:808 Species:Arabidopsis thaliana


Alignment Length:267 Identity:50/267 - (18%)
Similarity:87/267 - (32%) Gaps:110/267 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   387 PGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWR 451
            |..|||...||     |..|:::||..|||..:||...|..||.:..|...:::.|:||||.: .
plant   107 PLKKKKRYHRH-----TPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQ-M 165

  Fly   452 KTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDES 516
            ||:                 :.||     |..:...:.|:        :..:::...|.:::   
plant   166 KTQ-----------------IERH-----ENALLRQENDK--------LRAENMSVREAMRN--- 197

  Fly   517 DRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHVH 581
                                                  |..|:.||.              |.:.
plant   198 --------------------------------------PMCGNCGGP--------------AVIG 210

  Fly   582 AQAQAHAHMLLHHQQQQQQQQQ----------QQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGS 636
            ..:....|:.:.:.:.:.:..:          :....||:  .:::|    |.|.|.|||   |.
plant   211 EISMEEQHLRIENSRLKDELDRVCALTGKFLGRSNGSHHI--PDSAL----VLGVGVGSG---GC 266

  Fly   637 GTGAGST 643
            ..|.|.|
plant   267 NVGGGFT 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 20/56 (36%)
HDG1NP_191674.1 COG5576 69..185 CDD:227863 30/113 (27%)
Homeodomain 111..166 CDD:459649 22/60 (37%)
START_ArGLABRA2_like 314..537 CDD:176884
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.