Protein Alignment Vsx1 and shox

DIOPT Version :10

• Sequence 1: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Sequence 2: XP_005167911.1
• Gene: shox / 664748
• ZFINID: ZDB-GENE-051030-21
• Length: 304
• Species: Danio rerio
• Alignment Length: 207
• Identity: 65/207 - (31%)
• Similarity: 89/207 - (42%)
• Gaps: 63/207 - (30%)

  Fly   390 KKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTE 454
            :.|.|:|..||.||..||.|||:.|.|.||||...||.||.:.||:|.|:|||:||||||.||.|
Zfish   104 QSKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE 168

  Fly   455 K---------CWGH--STKMAEYGLYGAMVRHSLPLPETIIKSAKEDESV--------------- 493
            .         ...|  :.::|.|...||     |.:|...:::..:.|.|
Zfish   169 NQMHKGVILGTASHLDACRVAPYVNMGA-----LRMPFQQVQAQLQLEGVGTHSHPHLHPHLAAH 228

  Fly   494 APWLL------GMHKKSLEAAELLKSDESDRETPTSDDTNTSYS--AGSTHNSPISSFSISRLLF 550
            ||:|:      |:...||                 :|..:.:.:  |.:..||..||.:..||
Zfish   229 APYLMFPPPPFGLPIASL-----------------ADSASAAAAVVAAAKSNSKNSSIADLRL-- 274

  Fly   551 DAPPPAAGSAGG 562
                 .||..||
Zfish   275 -----KAGLLGG 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	33/56 (59%)
shox	XP_005167911.1	SCP-1	<1..>145	CDD:114219	22/40 (55%)
		Homeodomain	110..166	CDD:459649	33/55 (60%)