DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and SHOX2

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_003021.3 Gene:SHOX2 / 6474 HGNCID:10854 Length:355 Species:Homo sapiens


Alignment Length:405 Identity:103/405 - (25%)
Similarity:137/405 - (33%) Gaps:150/405 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 EQAAARGQEYASSLANASGDEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGG 246
            |....||.:..:....|..|::| |....::|.||.||.|.|.|||                   
Human    30 ESGPLRGAKEPTGCTEAGRDDRS-SPAVRAAGGGGGGGGGGGGGGG------------------- 74

  Fly   247 SGGGAGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAHHHA 311
             |||.|.||:|||:|              ||.|..|....|                 ||.....
Human    75 -GGGVGGGGAGGGAG--------------GGRSPVRELDMG-----------------AAERSRE 107

  Fly   312 AAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGG 376
            ..:...........:|...|                                    ..||.....
Human   108 PGSPRLTEGRRKPTKAEVQA------------------------------------TLLLPGEAF 136

  Fly   377 DVLVGP---------GGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKT 432
            ..||.|         .|....|:.|.|:|..||.||..||.|||:.|.|.||||...||.||.:.
Human   137 RFLVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL 201

  Fly   433 GLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDES--VAP 495
            ||:|.|:|||:||||||.||.|       .....|:              :|.:|.:.|:  |||
Human   202 GLSEARVQVWFQNRRAKCRKQE-------NQLHKGV--------------LIGAASQFEACRVAP 245

  Fly   496 WLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSA 560
            ::      ::.|..:          |...|::.:.       :|:|....::|..|       ||
Human   246 YV------NVGALRM----------PFQQDSHCNV-------TPLSFQVQAQLQLD-------SA 280

  Fly   561 GGKGHHHHHHHHKGH 575
            ....|||.|.|...|
Human   281 VAHAHHHLHPHLAAH 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 33/56 (59%)
SHOX2NP_003021.3 Homeodomain 165..221 CDD:459649 33/55 (60%)
OAR 335..351 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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