DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsx1 and dmbx1b

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001017625.1 Gene:dmbx1b / 550288 ZFINID:ZDB-GENE-050417-97 Length:369 Species:Danio rerio


Alignment Length:380 Identity:100/380 - (26%)
Similarity:142/380 - (37%) Gaps:94/380 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 HAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPG 383
            :.:..||.....|..::|..||.       ||.||..:..:....      .||....|:::   
Zfish     7 NGYSLHAMNSLSAMYNLHQQAAQ-------HAQHAPDYRPSVHAL------TLAERLADIIL--- 55

  Fly   384 GTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRA 448
             ....|.:..|:|..||.||:.|||.|||.|::.|||||..||.|:|.|.|.|.|:|||::||||
Zfish    56 -EARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA 119

  Fly   449 KWRKTEKCWGHS--TKMAEYGLYGAMVRHSLPLPE---------------TIIKSAKEDESVAPW 496
            |:||.::.....  .::.|.|..||........|.               |...|.:.:|.|   
Zfish   120 KFRKKQRSLQKEQLQRLKEAGTEGAQDEGKEEAPPVEAQAPPSPLDGRGLTSAPSCELNEEV--- 181

  Fly   497 LLGMHKKSLEAAELLKSDESDRE-TPTS--------------DDTNTSYSAGSTHNSPISSFSIS 546
              .:.......||....|.:||| .|.|              ||::.||       .|:|..|..
Zfish   182 --NVTSPEQSGAESGAEDTTDREDEPLSIKDEIKEAGPPLMTDDSSPSY-------KPLSPKSDD 237

  Fly   547 RLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHL 611
            .|:..|.|.::|:.                     ||:.::|...|...:.|:|.:|      |:
Zfish   238 PLVSPALPSSSGAV---------------------AQSNSYASSPLSLFRLQEQFRQ------HM 275

  Fly   612 HAAENSLQQQQVAGTGSGSGSGSGSGTG-AGSTGPPAHHPYNQQQHLHHLQQLQQ 665
            .|..|.:.......|...|....|.... |...|.....||.|.     |.|.||
Zfish   276 AATNNLMHYPAFDVTAPSSLPYLGVNVNMASPLGSLPCQPYYQT-----LTQAQQ 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 33/56 (59%)
dmbx1bNP_001017625.1 Homeodomain 67..123 CDD:459649 33/55 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..253 28/161 (17%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 346..359
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.