Protein Alignment Vsx1 and repo

DIOPT Version :10

• Sequence 1: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Sequence 2: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Alignment Length: 783
• Identity: 178/783 - (22%)
• Similarity: 259/783 - (33%)
• Gaps: 269/783 - (34%)

  Fly    35 PPSPAATPP--PTANTPANGSLSAVQQQQQQQQQQQQQQQQLQQQQQQAIDSLRESRSISPDVSR 97
            |.:|....|  ||........|.:|.:...|||||||||:            |.:..:|.|:...
  Fly    18 PLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQR------------LPDCNTILPNGGG 70

  Fly    98 LSAAAAAAAAAAAHC-------QLPVFNPANFYAAAGYAAA----ADPGNAAAAHHHHMTTLAAA 151
            ..|.:..|..:..:.       ::..::|:..|.   |.:|    .:.......||.|.....|.
  Fly    71 GGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYE---YISAPQKLVEQQQQQQHHHQHHQHYTAT 132

  Fly   152 AYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSL---------------ANASGD 201
                   ||            ..|.|....:|::.:.|:....|               :::..|
  Fly   133 -------PP------------PSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKD 178

  Fly   202 EQSPSKNSSSSGNGGSGGSGSGSGGGNP--------TSNGLGHLGSPTASNGGSGGG-------- 250
            :..|.:.....             ||:|        .|:||....||...||||.||
  Fly   179 QYEPQQLQHLY-------------GGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEM 230

  Fly   251 AGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAA 315
            .....:||...|..|:|||..||...|:..:.||      |:|....|.||..|..    .||.|
  Fly   231 CSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSS------SSAGVGIQGAAGTAGG----VAAPA 285

  Fly   316 AAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLV 380
            |...                                      |::....|:||.:
  Fly   286 AKKD--------------------------------------GSSSKKKGDPNGI---------- 302

  Fly   381 GPGGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQN 445
                         |::..||.||:.||||||:||:.|.||||.|||.|::|..|:|.|:|||:||
  Fly   303 -------------KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQN 354

  Fly   446 RRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETI--------IKSAKEDESVAPWLLGMHK 502
            |||||||.|     ..:...|      ::.|.|...|:        ..|..:..:|.|
  Fly   355 RRAKWRKHE-----PPRKTGY------IKTSTPPTATLNPGTLAPPFTSYPQTTTVTP------- 401

  Fly   503 KSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAGGKGHHH 567
                              |.|.|:.|||..........|..|          |||...|
  Fly   402 ------------------PGSMDSWTSYQTPYELTPQFSLLS----------PAASPYG------ 432

  Fly   568 HHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVAGTGSGSGS 632
               .:.|.:.|:||                 :.|....:|:.:    .:..:.:..|.|||.:|:
  Fly   433 ---TYSGQYGAYVH-----------------ESQLFPMRHYEY----GSPTRMEMGATTGSVAGN 473

  Fly   633 GSGSGTGAGSTGPPAHHPYNQQQ---------HLHHLQQLQQQQQQQQQQAQQQQQHHHHQHHHS 688
            |..|....||..........|||         |.|..||.||||...:..:.::.::.|.|.|.|
  Fly   474 GDESVANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQS 538

  Fly   689 VHHMHHHNAAAGYAEAAVAAAAAAAAVAAAANARNAAAAAAVAAASAS----ASAAVTIAESEAE 749
                      .|..|.:..|:..............|...||.|..::|    :....|:.:||..
  Fly   539 ----------GGGLELSPGASCHLVEAQGQHYVTTATGGAASAGGTSSDDNDSGGMQTVIKSEEV 593

  Fly   750 EEQ 752
            .:|
  Fly   594 SQQ 596

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	35/56 (63%)
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	31/47 (66%)