DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and toy

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster


Alignment Length:386 Identity:89/386 - (23%)
Similarity:139/386 - (36%) Gaps:62/386 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 AAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQ 406
            :...:|.::|.:.:...:...:.|:.:|.:..                :.|.|.:..||.|::.|
  Fly   228 SVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRL----------------RLKRKLQRNRTSFSNEQ 276

  Fly   407 LEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGA 471
            ::.|||.|:..|||||.|||.|:.|.||.|.|||||:.|||||||:.||..............|.
  Fly   277 IDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGR 341

  Fly   472 MVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPTSDD--TNTSYSAGS 534
            ....:.|...|...|.....:..|   |:...::..||...|.......|.:.:  |.....|.:
  Fly   342 TSTANNPSGTTASSSVATSNNSTP---GIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANT 403

  Fly   535 THNS-------------PISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQA 586
            ||.|             |::| ..:.:....|.|.|..|      .:::...|........|..|
  Fly   404 THTSSESPPLQPAAPRLPLNS-GFNTMYSSIPQPIATMA------ENYNSSLGSMTPSCLQQRDA 461

  Fly   587 HAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVA-GTGSGSGSGSGSGTGAGSTGPPA--- 647
            :.:|.  |............||.:.....::..||... |..:.|.....|.||..|.|...   
  Fly   462 YPYMF--HDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGVYTNSSPMPSSNTGVISAGVSVPVQ 524

  Fly   648 -------------HHPYNQQQHL--HHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVHHMH 693
                         :.|..| ..:  ..|..|.:........||..::.|.|:..||:..:|
  Fly   525 ISTQNVSDLTGSNYWPRLQXSSIFGSPLDHLSKATAAAIIAAQAAEKSHKHRKEHSIVSIH 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 32/56 (57%)
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 44/133 (33%)
Homeodomain 267..322 CDD:459649 32/54 (59%)
Blue background indicates that the domain is not in the aligned region.

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