DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and ey

DIOPT Version :9

Sequence 1:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:667 Identity:156/667 - (23%)
Similarity:224/667 - (33%) Gaps:182/667 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 ASGDEQSPSKNSSSSGNGGS---------GGS----GSGSGGGNPTSNGLGHLGSPTASNGGSGG 249
            |..::||....|||:..|.|         ||:    .|||.|...:|..|....:|.  |....|
  Fly   225 AQKEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPL--NSSESG 287

  Fly   250 GAGVGGSGGGSGTSGSNS-----STSGNGGNGGSSGSRSSP---AGPHHSAALAAHQHAAAAAAA 306
            ||  ..||.||.......     :|....|.|....:|::|   ..|:|....::|....     
  Fly   288 GA--SNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLV----- 345

  Fly   307 AHHHAAAAAAAHHAHHAHAQAHAH-----------------------AHAHVHAHAAHAAHAAHA 348
                        |.:|...|.|..                       :..::.:..|:|:..:.|
  Fly   346 ------------HGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLA 398

  Fly   349 HAHHAEAFLGAAGGAGGNPNSLLA-----------AHGGDVL-VGPGGTGPGGKK---------- 391
            |:......:.:....|...|..:|           .|..|.. .|.|....||..          
  Fly   399 HSLSPPNDIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQA 463

  Fly   392 ----KNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRK 452
                |.|.:..||.||:.|::.|||.|:..|||||.|||.|:.|.||.|.|||||:.|||||||:
  Fly   464 RLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRR 528

  Fly   453 TEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESD 517
            .||                 :|:....|.:...||....:.|...|.....||.|...|.|..:.
  Fly   529 EEK-----------------LRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAG 576

  Fly   518 RETPTSDDTNTSYSAGSTH-NSPISSFSISRLLFDAPPP-------AAGSAG------------- 561
            ..:.::.:..:|.|..||: |:|.....|.......|.|       :....|             
  Fly   577 GPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPC 641

  Fly   562 --GKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQVA 624
              |.|.|.:.||.:.:.||..||...|.:.. |:.............||..|..:::        
  Fly   642 PLGVGGHQNTHHIQSNGHAQGHALVPAISPR-LNFNSGSFGAMYSNMHHTALSMSDS-------- 697

  Fly   625 GTGSGSGSGSGSGTGAGSTGPPAHHPYNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQ----- 684
             .|:.:...|.:.:..|...||:..|                   ||........:..|.     
  Fly   698 -YGAVTPIPSFNHSAVGPLAPPSPIP-------------------QQGDLTPSSLYPCHMTLRPP 742

  Fly   685 -----HHHSVHHMHHHNAAAGYAEAAVAAAAA-----------AAAVAAAANARNAAAAAAVAAA 733
                 |||.|.......|..|......|...|           |.|:.....|.::||.::.:||
  Fly   743 PMAPAHHHIVPGDGGRPAGVGLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAA 807

  Fly   734 SASASAAVTIAESEAEE 750
            | ||||.||...:.|:|
  Fly   808 S-SASANVTPHHTIAQE 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 32/51 (63%)
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 32/51 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450843
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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