DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and ems

DIOPT Version :9

Sequence 1:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster


Alignment Length:535 Identity:121/535 - (22%)
Similarity:169/535 - (31%) Gaps:183/535 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQATKMRTPFAIQEILGLGAYQQQATASATPS----EAPP--------SPAATPPPTAN------ 47
            |...|.:..|:|:.|:|...  ..|..::||.    ::||        ||..|||.|..      
  Fly    17 MPTPKQKIGFSIESIVGNDV--STAGGNSTPDLSGPQSPPPGERNVPGSPPQTPPATLTLIPGSP 79

  Fly    48 ------TPANGSLSAVQQQQQQQQQ--------QQQQQQQLQQ---QQQQAIDSLRESRSISPDV 95
                  .||:|........|||..|        ...||..|.|   .|||...:.:..:.|...:
  Fly    80 PHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVLHQHLLMQQQHPGTPKSHQDIQELL 144

  Fly    96 SRLSAAAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLRGFLPP 160
            .||                                           ||:....:..:.|:..|.|
  Fly   145 QRL-------------------------------------------HHNAAMASGLSPLQTRLSP 166

  Fly   161 GFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANASGDEQSPSKNSSSSGNGGSGGSGSGSG 225
            ....|       |.....:.....|....|.|.:.|.......:|.|:.|...:           
  Fly   167 ETEQP-------QMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSS----------- 213

  Fly   226 GGNPTSNGLGHLGSPTASNGGS----------------GGGAGVGGSGGGSGTSGSNSSTSGNGG 274
              .|:|:....:.||.|:....                .||||.....|............|.||
  Fly   214 --QPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGLVRPFPMGPGG 276

  Fly   275 NGGSSGSRSSP----------AGP-----HHSAALAAHQHAAAAAAAAHH---HAAAAAAAHHAH 321
            .....|....|          |.|     |:...:||.|...|||..|.|   .|||||||    
  Fly   277 PPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAA---- 337

  Fly   322 HAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNS---LLAAHG-------- 375
                       |.:..|||.              |:...|.|..:...   ||:.||        
  Fly   338 -----------AGLPPHAAQ--------------FMPNPGMARDSYQLYPWLLSRHGRIFPHRFP 377

  Fly   376 GDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQ 440
            |..||.|       .:|.||.  ||.|:.|||.:||.||:...|...:.|:.|:....|:|.:::
  Fly   378 GSFLVPP-------FRKPKRI--RTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVK 433

  Fly   441 VWYQNRRAKWRKTEK 455
            ||:||||.|.::.::
  Fly   434 VWFQNRRTKHKRMQQ 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 22/51 (43%)
emsNP_731868.1 Homeobox 392..444 CDD:278475 22/51 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 59 1.000 Inparanoid score I4021
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.960

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