Protein Alignment Vsx1 and Scr

DIOPT Version :10

• Sequence 1: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 588
• Identity: 126/588 - (21%)
• Similarity: 195/588 - (33%)
• Gaps: 214/588 - (36%)

  Fly   185 AARGQEYASSLANASGDEQSPSKNSSSSGN---GGSGGSGSGSGGGNP---TSNGLGHLGSPT-- 241
            |....::.:|||:....:.:|.:|...:||   |||||...||||..|   |:.|.|..|:.|
  Fly     7 AMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPG 71

  Fly   242 ---------------------------ASNGGSG------------------------------G 249
                                       |:.||.|                              .
  Fly    72 ANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHA 136

  Fly   250 GAGV------------------------------------GGSGGG--SGTSGSNSSTSGNGGNG 276
            .|.|                                    ||||||  ||::.:|:|.:.|..|.
  Fly   137 AAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNS 201

  Fly   277 GSSGS-----------RSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQAHAH 330
            .|..|           :.||:....|.|.:.::.....:.||   |||||..::.|.....:...
  Fly   202 QSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAA---AAAAAGLNNNHSGSGVSGGP 263

  Fly   331 AHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGG---NPNSLL----AAHGGDVLVGPGGTGPG 388
            .:.:|..|:.....:........||  |::..:|.   ||..:.    ..|.|...|...|
  Fly   264 GNVNVPMHSPGGGDSDSESDSGNEA--GSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANG---- 322

  Fly   389 GKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKT 453
               :.||:  ||.:|..|..||||.|....|.....|..::....|.|.:|::|:||||.||:|.
  Fly   323 ---ETKRQ--RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 382

  Fly   454 EKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLG-----MHKKSLEAAEL--L 511
            .       |||..                         ::.|:.:|     .|:..:..::.  |
  Fly   383 H-------KMASM-------------------------NIVPYHMGPYGHPYHQFDIHPSQFAHL 415

  Fly   512 KSDESDRETPTSDDTNTSY----------SAGSTHNS----PISSFSISRLLFDAPPPAAGSAGG 562
            .: ::...:.|. ..|..|          ||.|.:.|    ||...|:.         ..|.|||
  Fly   416 SAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQDGGPIGGGSVG---------VGGGAGG 471

  Fly   563 KGH-HHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQ-------QQQQQQQQQHHHHLHAAENSLQ 619
            .|. .:...:..|.:.....|.:.:.|...:.:.|:       :||.||||         :||:.
  Fly   472 PGSLANGGSNGSGPNSLFASAASSSQAPDCIKYPQEFXSQVIIRQQHQQQQ---------DNSMD 527

  Fly   620 QQQ 622
            :.|
  Fly   528 RNQ 530

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	22/56 (39%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	23/57 (40%)