DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and prrx1a

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_999899.1 Gene:prrx1a / 406431 ZFINID:ZDB-GENE-020905-5 Length:245 Species:Danio rerio


Alignment Length:246 Identity:66/246 - (26%)
Similarity:92/246 - (37%) Gaps:90/246 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 AHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGG 384
            |:..|.||..:...   :|......|.......||...|.||.:              :|..||.
Zfish    25 ANQDHLQAKKNFSV---SHLLDLEEAREMVGAQAEESAGEAGRS--------------MLESPGL 72

  Fly   385 TGPGG-------------KKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAE 436
            |....             |||.|:|..||.|.||||:.||:.|:..||||...||.|:.:..|.|
Zfish    73 TSGSDTTQQENEQLNAEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTE 137

  Fly   437 DRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMH 501
            .|:|||:||||||:|:.|:               ||:                            
Zfish   138 ARVQVWFQNRRAKFRRNER---------------AML---------------------------- 159

  Fly   502 KKSLEAAELLKSDESD----------RETPTSDD-----TNTSYSAGSTHN 537
              :.:.|.||||...:          |..|..:|     ::.||||.:|::
Zfish   160 --ASKNASLLKSFSGEVTAVEQPIVPRPAPRPNDYLSWGSSPSYSAMATYS 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 30/56 (54%)
prrx1aNP_999899.1 Homeodomain 101..153 CDD:459649 28/51 (55%)
OAR 220..237 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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