Protein Alignment Vsx1 and CG4328

DIOPT Version :10

• Sequence 1: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Sequence 2: NP_648567.2
• Gene: CG4328 / 39405
• FlyBaseID: FBgn0036274
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 453
• Identity: 93/453 - (20%)
• Similarity: 139/453 - (30%)
• Gaps: 138/453 - (30%)

  Fly    70 QQQQLQQQQQQAIDSLRESRSISPDVSRLSAAAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADP 134
            |||||...|......|.:...::.:...|:....||.:..              .|||.:|:.
  Fly    20 QQQQLGAGQLPQTGGLNQLLLLNGNERMLTTPTTAATSVV--------------VAAGRSAST-- 68

  Fly   135 GNAAAAHHHHMTTLAAAAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANAS 199
             .|..||:..|.:::...                .|....|                     |:|
  Fly    69 -KAGVAHNDKMASVSRTV----------------NGSCSNH---------------------NSS 95

  Fly   200 GDEQSPSKNSSSS------------GNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGGAG 252
            ....|.|.||||:            |.|...|:|:|.|.|.|.......:.....|..|..|.|.
  Fly    96 NSSSSSSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLNGMDGFAT 160

  Fly   253 VGGSGGGSGTSGSNSSTSGNGGNGGSSG-SRSSPAGPHHSAALAAH-------QHAAAAAAAAHH 309
            .......|.|..:....:.|.|.|...| :.:||     ..:..||       ::.......:.|
  Fly   161 PAAPPSASNTPQAPLGMASNSGMGMELGLAMASP-----QLSQCAHCCQPICDRYIMRVVENSFH 220

  Fly   310 HA---AAAAAAHHAHHAHAQAHA------HAHAHVHAH---------AAHAAHAAHAHAHHAEAF 356
            ..   ..|.:.|..|..:|:...      :...::..|         |.......|.:..|.:.|
  Fly   221 EGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCF 285

  Fly   357 LGAAGGAGGNPNSLLAAHG-----------------------------GDVLVGPGGTGPGGKKK 392
            .....||       |...|                             ||.|..|...|..|.|:
  Fly   286 ACVVCGA-------LLKKGEQYVVKQGQLFCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKR 343

  Fly   393 NKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEK 455
                 .|||..:.|....:.:|:.:..|....||.|:..|||:...:|||:||:|||.:|.:|
  Fly   344 -----PRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQK 401

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	20/56 (36%)
CG4328	NP_648567.2	LIM1_Lmx1b	199..251	CDD:188757	7/51 (14%)
		LIM	259..313	CDD:413332	8/60 (13%)
		COG5576	<332..439	CDD:227863	26/75 (35%)
		HOX	341..393	CDD:197696	18/56 (32%)