DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and gsb

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster


Alignment Length:281 Identity:69/281 - (24%)
Similarity:107/281 - (38%) Gaps:82/281 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 GAGGNPNSLLAAHGGDVLVGPGGTG-------------PGGKKKNKRRHGRTIFTSSQLEELEKA 413
            |:.|:..|    |..|.::| ||.|             |..:.|.|:|..||.|::.|::.||:.
  Fly   144 GSSGSGTS----HSIDGILG-GGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERI 203

  Fly   414 FKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRK-------------------------- 452
            |....||||..||.|:..|||.|.|:|||:.||||:.||                          
  Fly   204 FARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAA 268

  Fly   453 ----------TEKCWGHSTKMAEYGLYGAMVRHSLPLPET----------IIKSAKEDESVAPWL 497
                      :.:.|..|.....:..||..|....|...|          :...|::..:.:.::
  Fly   269 PAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFM 333

  Fly   498 LGMHKKSLEAAELLKSDESDRETPTSDDTN------TSYSAGSTHNSPISSFSISRLLFDAPPPA 556
            ...:......|....:..|..:||.:....      ::.::||.|.|...|::.:...|   |||
  Fly   334 TSTYGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFF---PPA 395

  Fly   557 AGSAGGKGHHHHHHHHKGHHH 577
              ||.|       :|..|:||
  Fly   396 --SAAG-------NHISGYHH 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 27/56 (48%)
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 27/55 (49%)
Blue background indicates that the domain is not in the aligned region.

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