DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and CG9876

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster


Alignment Length:122 Identity:50/122 - (40%)
Similarity:65/122 - (53%) Gaps:9/122 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 HAAHAAHAHAHHAEAFLGAAG-GAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRTIFTS 404
            |.|::....|....:..|..| |.||....  |...|::   |.|   ||....|.|..||.|:|
  Fly    70 HDAYSKGKMAMELSSNFGPTGAGCGGADRP--APCSGNL---PAG---GGHHSRKPRRNRTTFSS 126

  Fly   405 SQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHST 461
            :||..|||.|:..||||...||.|:.|..|:|.|:|||:||||||:|:.|:..|..|
  Fly   127 AQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVGSRT 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 31/56 (55%)
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 31/55 (56%)

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