DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and otp

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001286654.1 Gene:otp / 37364 FlyBaseID:FBgn0015524 Length:416 Species:Drosophila melanogaster


Alignment Length:487 Identity:118/487 - (24%)
Similarity:166/487 - (34%) Gaps:187/487 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 SGSGSGGGNPTSNGLGHLGSPTASNGGSGGGAGVGGSGGGSGTSG-----SNSSTSGNGGNGGSS 279
            :|..|.|..|....|..||. .|..|||.||..|||.......||     ||:...|||.:|..:
  Fly    27 AGVNSFGQLPVGPNLADLGG-GAGGGGSSGGVPVGGGVARLHISGGLCDNSNALNGGNGSSGNGN 90

  Fly   280 GSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAH 344
            |:.::..|.::::.....||.                                            
  Fly    91 GNNNNGNGNNNNSMQQQDQHL-------------------------------------------- 111

  Fly   345 AAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQLEE 409
                                                          .|||::..||.||.:||.|
  Fly   112 ----------------------------------------------DKNKQKRHRTRFTPAQLNE 130

  Fly   410 LEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMV- 473
            ||:.|.:.||||:..||.::|:.||.|.|:|||:|||||||:|.:|    :|.:  :...||:: 
  Fly   131 LERCFSKTHYPDIFMREEIAMRIGLTESRVQVWFQNRRAKWKKRKK----TTNV--FRTPGALLP 189

  Fly   474 RHSL-PLPETIIKSAKEDESVAP-------WLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSY 530
            .|.| |....|...|..|.....       |.:|::..:....:|      ::.:|.|...|:..
  Fly   190 SHGLPPFGANITNIAMGDGLCGTGMFGGDRWSVGVNPMTAGFGQL------NQSSPLSSSLNSGL 248

  Fly   531 SAGSTHNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQ 595
            ::|..                     .|||.|.|.:                             
  Fly   249 NSGIN---------------------MGSALGAGSY----------------------------- 263

  Fly   596 QQQQQQQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSGT------GAGSTGPP--AHHPYN 652
                       .|:.|:|..:|:..|...|..|...|||.|.|      ...|..||  :..|.:
  Fly   264 -----------QHYGLNALGDSMMYQHSVGGVSCGPSGSPSATTPPNMNSCSSVTPPPLSAQPNS 317

  Fly   653 QQQHLH-HLQQLQQQQQQQQQQAQQQQQHHHH 683
            .|..|: ....|.||||||..|.||||.|.||
  Fly   318 SQNELNGEPMPLHQQQQQQTHQHQQQQTHQHH 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 31/56 (55%)
otpNP_001286654.1 Homeodomain 117..168 CDD:459649 26/50 (52%)

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