DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and CG32532

DIOPT Version :9

Sequence 1:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_608318.5 Gene:CG32532 / 32943 FlyBaseID:FBgn0052532 Length:688 Species:Drosophila melanogaster


Alignment Length:592 Identity:155/592 - (26%)
Similarity:207/592 - (34%) Gaps:197/592 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 QQQATASATPSEAPPSPAATPPPTANTPANGSLSAVQQQQQQQQQQQQQQQQLQQQQQQAIDSLR 86
            |||..|...|                 |..|..|.:|||||||||||||||| ||||||.|:   
  Fly   196 QQQQQAQQLP-----------------PGVGVASPLQQQQQQQQQQQQQQQQ-QQQQQQLIN--- 239

  Fly    87 ESRSISPDVSRL--------SAAAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHH 143
             :..:|.....|        |.|...:.:|||             |||..||||...:::..|  
  Fly   240 -NGGVSAGTPTLLIGNGPSSSGAGTGSVSAAA-------------AAAAAAAAASSSSSSLPH-- 288

  Fly   144 HMTTLAAAAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYA------SSLANASGDE 202
                  .|.:..|..|...:...:| ..|...|..|....|..:|.:.:      :.:....|.:
  Fly   289 ------VAPHSLGLSPQSSADSQQF-NIFPAIFSRQLNFSAGGQGGKLSMDELRPNLVGGLLGLQ 346

  Fly   203 QSPSKNSSSSGNGGSGGSGS----------GSGGGNPTSNGLGHLGSPTASNGGSGGGAGVGGSG 257
            |...::.:|..:||.|....          |.||.:  .|.|..|.|            .|..:.
  Fly   347 QGLLEDHASMQHGGVGQDTKFMSFQDQRLMGIGGSH--ENRLLSLAS------------SVQDTR 397

  Fly   258 GGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHH 322
            ....|...:||:|.|       ..|...:.|...:||.:........:::|||..|         
  Fly   398 SPITTLEKSSSSSLN-------HQRKCSSTPEDFSALYSGLPTPGMDSSSHHHTPA--------- 446

  Fly   323 AHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGP 387
                         |...:..:.    |...||   ||.......|||.|:.      |..|.|.|
  Fly   447 -------------HTPPSRLSD----HTISAE---GAFKKLKPEPNSGLST------VSAGITSP 485

  Fly   388 GGKKKN------------------KRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGL 434
            |....:                  :||| ||.||..||.|||.||.::||||:..||.|:..|.|
  Fly   486 GSGLSSLSQHAGHTPTTASCPTPARRRH-RTTFTQEQLAELEAAFAKSHYPDIYCREELARTTKL 549

  Fly   435 AEDRIQVWYQNRRAKWRKTEK-------------CWG------------------HSTKMAEY-- 466
            .|.|||||:||||||:||.||             |.|                  |...|..|  
  Fly   550 NEARIQVWFQNRRAKYRKQEKQLQKALAPSVIPSCNGMMRNIQGYSVSRGYQPYPHHNTMNRYPQ 614

  Fly   467 -------GLYGAMVR-----HSLPLPETIIK--SAKEDESVAP---WLLGMHKKSLEAAELLKSD 514
                   ..|..|.:     ||..:....::  |..|...::|   |    :.|||.|..:..|.
  Fly   615 DLFQMGASSYPGMTQPFSMAHSTNMGSVGVRQDSMGEFHGMSPEDEW----YNKSLSALRMNSSH 675

  Fly   515 ESDRETP 521
            ..:...|
  Fly   676 HPNLSAP 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 32/51 (63%)
CG32532NP_608318.5 Homeobox 513..566 CDD:278475 33/53 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450862
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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