DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsx1 and oc

DIOPT Version :9

Sequence 1:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster


Alignment Length:761 Identity:171/761 - (22%)
Similarity:250/761 - (32%) Gaps:318/761 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 AAGYAAAAD----PGNAAAAHHHHMTTLAAAAYLRGFLPPG--------FSTPH--EFRGHFQQH 175
            |||:..:.|    |.:....|.||...       .|.||||        |..||  |..|..|..
  Fly     2 AAGFLKSGDLGPHPHSYGGPHPHHSVP-------HGPLPPGMPMPSLGPFGLPHGLEAVGFSQGM 59

  Fly   176 FGAQFAEQAAAR-------------------------GQEYASSL-------------------A 196
            :|....:|...|                         .:|.|..:                   .
  Fly    60 WGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 124

  Fly   197 NASGDEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGGAGVGGSGGGSG 261
            .....:||.|.:||.:.:||..|:...|...|..||         ::|.||........|||.:.
  Fly   125 QLQQQQQSNSLSSSKNASGGGSGNSCSSSSANSRSN---------SNNNGSSSNNNTQSSGGNNS 180

  Fly   262 TSGS----NSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAH----HH----AAAA 314
            ...|    ||.:|..|  |||||..:|   .::|||.||  .||||.|||.    ||    :|||
  Fly   181 NKSSQKQGNSQSSQQG--GGSSGGNNS---NNNSAAAAA--SAAAAVAAAQSIKTHHSSFLSAAA 238

  Fly   315 AAAHHAHHAHAQAHAH---------------------AHAHVHAHAAHAA---HAAHAHA----- 350
            |||....:..|..:::                     |..|:.|.||.||   .|||.::     
  Fly   239 AAASGGTNQSANNNSNNNNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLP 303

  Fly   351 ----------------HHAEAFLGAAGGAGGNPNSLLAAHGG-DVLVGPG-GTGPGGKKKNKRRH 397
                            |.:..:..:.||.||...   |:.|| ::.||.| |.|.|         
  Fly   304 TPATSVSPVSIVCKKEHLSGGYGSSVGGGGGGGG---ASSGGLNLGVGVGVGVGVG--------- 356

  Fly   398 GRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWG---- 458
                                              .|:::|.:       |:.:.:.:...|    
  Fly   357 ----------------------------------VGVSQDLL-------RSPYDQLKDAGGDIGA 380

  Fly   459 --HSTKMAEYGLYGAMVRHSLPLPE-----TIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDES 516
              |.    .:.:||:....:..|.:     |.:.|:....:.:|.:..|..:|..||        
  Fly   381 GVHH----HHSIYGSAAGSNPRLLQPGGNITPMDSSSSITTPSPPITPMSPQSAAAA-------- 433

  Fly   517 DRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHH--HHKGHHHAH 579
                     .:.:.||.|.|:|                 ||.||....:|..::  |::...:.:
  Fly   434 ---------AHAAQSAQSAHHS-----------------AAHSAAYMSNHDSYNFWHNQYQQYPN 472

  Fly   580 VHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHA------------------------AENSLQ- 619
            .:|||.:      ::.|.:....|.|.:::..|:                        ::|||. 
  Fly   473 NYAQAPS------YYSQMEYFSNQNQVNYNMGHSGYTASNFGLSPSPSFTGTVSAQAFSQNSLDY 531

  Fly   620 ---QQQVA--------------------------------------GTGSGSGSGSGSGTGAGST 643
               |.:.|                                      |:|.|||||||||:|:||.
  Fly   532 MSPQDKYANMVXNLLFQYCSGGSNNNSSAGASGSGSGSGSGSGSGSGSGCGSGSGSGSGSGSGSN 596

  Fly   644 GPPAHHPYNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHH--QHHH 687
            ..|....::.|||.|.|||.|..|...|.|.|....||||  ||||
  Fly   597 SSPQLEQHHHQQHQHQLQQHQHHQNHHQNQHQNHHGHHHHQQQHHH 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 3/51 (6%)
ocNP_001356934.1 Homeobox 71..123 CDD:333795 3/51 (6%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450974
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.