DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and Pitx2

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001035967.1 Gene:Pitx2 / 18741 MGIID:109340 Length:324 Species:Mus musculus


Alignment Length:245 Identity:77/245 - (31%)
Similarity:103/245 - (42%) Gaps:51/245 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 AAHAHAHHAEAFLGAAGGAGGNPNSL------LAAH----GGDVLVGPGGTGPGGK--------- 390
            |:....||.:|...|:..|.|.|.||      |..|    .....|.....|..||         
Mouse    22 ASSPFCHHPQALAMASVLAPGQPRSLDSSKHRLEVHTISDTSSPEVAEKDKGQQGKNEDVGAEDP 86

  Fly   391 -KKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTE 454
             ||.::|..||.|||.||:|||..|:...|||:|.||.:::.|.|.|.|::||::||||||||.|
Mouse    87 SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 151

  Fly   455 KCWGHSTKMAEYG----LYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDE 515
            :  ....::.:.|    ..|.|..:....|         ..|...|.    .|.|.:|.|     
Mouse   152 R--NQQAELCKNGFGPQFNGLMQPYDDMYP---------GYSYNNWA----AKGLTSASL----- 196

  Fly   516 SDRETPTSDDTN----TSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAG 561
            |.:..|..:..|    :|.|..|..|| |||.|:|..:  .|....|..|
Mouse   197 STKSFPFFNSMNVNPLSSQSMFSPPNS-ISSMSMSSSM--VPSAVTGVPG 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 30/56 (54%)
Pitx2NP_001035967.1 Homeodomain 93..149 CDD:459649 30/55 (55%)
OAR 282..299 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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