DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and Vsx2

DIOPT Version :9

Sequence 1:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_017449515.1 Gene:Vsx2 / 171360 RGDID:621215 Length:380 Species:Rattus norvegicus


Alignment Length:271 Identity:119/271 - (43%)
Similarity:135/271 - (49%) Gaps:103/271 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 AHHAEAFLGAAGGAGGNPNSLLAAH--------GGDVLVGPGG---------------------- 384
            :|...|..|.|      |..||||.        |...|:||||                      
  Rat    47 SHPRAALDGLA------PGHLLAARSVLSPAGVGSMGLLGPGGLPGFYAQPTFLEVLSDPQSVHL 105

  Fly   385 ------TGP---------------------------GGKKKNKRRHGRTIFTSSQLEELEKAFKE 416
                  :||                           ..||:.|||| ||||||.|||||||||.|
  Rat   106 QPLGRASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRH-RTIFTSYQLEELEKAFNE 169

  Fly   417 AHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPE 481
            ||||||.|||:|:|||.|.|||||||:|||||||||.|||||.|:.||||||||||||||:||||
  Rat   170 AHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPE 234

  Fly   482 TIIKSAKED--ESVAPWL-------------------LGMHKKSLEAAE------------LLKS 513
            :|:||||:.  :|.||||                   |||||||||||.            |.|.
  Rat   235 SILKSAKDGIMDSCAPWLLVQDGFPRRFSKPEYQQFFLGMHKKSLEAAAESGRKPEVERQVLPKL 299

  Fly   514 DESDRETPTSD 524
            |:.::|....|
  Rat   300 DKMEQEERAPD 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 43/51 (84%)
Vsx2XP_017449515.1 Homeobox 153..205 CDD:395001 43/51 (84%)
OAR 319..337 CDD:397759
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0494
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002963
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46892
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

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