DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and LOC1272680

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_061512690.1 Gene:LOC1272680 / 1272680 VectorBaseID:AGAMI1_000532 Length:449 Species:Anopheles gambiae


Alignment Length:306 Identity:80/306 - (26%)
Similarity:107/306 - (34%) Gaps:103/306 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 HGGDVLVGPGG------TGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKT 432
            ||  :|.|.|.      :.||...|.|:|..||.|||.|||.|||||....||||..||.|:..|
Mosquito   187 HG--ILGGRGSDSSDTESEPGILLKRKQRRSRTTFTSEQLEALEKAFTRTQYPDVYTREELASTT 249

  Fly   433 GLAEDRIQVWYQNRRAKWRKTEKCWGH-----STKMAEYGLYGAMVRHSLPLPETIIKSAKEDES 492
            .|.|.|||||:.||||:.||      |     ||.::..|        |||:             
Mosquito   250 NLTEARIQVWFSNRRARLRK------HAGAQMSTPLSSLG--------SLPM------------- 287

  Fly   493 VAPWLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAA 557
                                               :.|..|...|......:.:...|.|..|:.
Mosquito   288 -----------------------------------SQYHPGVASNDSYQMAAAANYEFVAQNPST 317

  Fly   558 GSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQ---QQQQQQQQHHHHLHAAENSLQ 619
            .::|     |..|.|.|       .|..:..||..|...|:   .:..:.....:...|.|||::
Mosquito   318 FTSG-----HFQHGHFG-------GQNFSTNHMGFHQNNQEFLPSEYTKMMSEEYIKPAHENSIK 370

  Fly   620 QQQVAGTGSGSGSGSGSGTGAGSTGP------PAHHPYNQQQHLHH 659
            .       |.||:.:.:........|      |...|::|....||
Mosquito   371 L-------SPSGNQAENYVKVPPAAPVTASIAPQETPWSQSYPPHH 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 33/56 (59%)
LOC1272680XP_061512690.1 None

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