DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and Vsx1

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_473409.1 Gene:Vsx1 / 114889 MGIID:1890816 Length:363 Species:Mus musculus


Alignment Length:342 Identity:130/342 - (38%)
Similarity:159/342 - (46%) Gaps:55/342 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 PTASNGG----SGGGAGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSS-PAGPHHSAALAAHQH 299
            ||.:..|    ||..|...|||.|.|.           |..||..:|.: |.|........|...
Mouse    44 PTPAEPGLRSNSGDPAEAIGSGPGPGP-----------GLCGSCPARGALPLGLGLLCGFGAQPP 97

  Fly   300 AAAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAG 364
            :|||||.|.   ....|......:.....|.|...||...|..:.........::         |
Mouse    98 SAAAAARAR---CLLLADLRLLPSAGPEPAVAQGPVHPPPALGSQQRSESVSTSD---------G 150

  Fly   365 GNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLS 429
            .:|:.........:::|         |:.|||| ||:||:.|||||||||.|||||||.|||:|:
Mouse   151 DSPSEEKNDPKMSLILG---------KRKKRRH-RTVFTAHQLEELEKAFGEAHYPDVYAREMLA 205

  Fly   430 MKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKE-DESV 493
            .||.|.|||||||:|||||||||.||.||.|:.|||||||||||||.:|||::::.||.. ..|.
Mouse   206 AKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSADSLQGSC 270

  Fly   494 APWLLGMHKKSL---------------EAAELLKSDESDRETP-TSDDTNTSYSAGSTHNSPISS 542
            |||||||||||.               |...|.|....|.:.| ...|..|.....|..:..|..
Mouse   271 APWLLGMHKKSTGMRKPESEDKLAGLWEFDHLKKGANKDEDGPERGPDETTQNPENSLEDVAIDL 335

  Fly   543 FSISRLLFDAPPPAAGS 559
            .|.||......||.:.:
Mouse   336 SSSSRQETKKMPPGSST 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 44/56 (79%)
Vsx1NP_473409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Octapeptide motif 31..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..66 10/25 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..166 5/43 (12%)
Nuclear localization signal. /evidence=ECO:0000255 168..173 2/4 (50%)
Homeodomain 172..228 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..363 23/78 (29%)
Blue background indicates that the domain is not in the aligned region.

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