DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and pitx3

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_002935807.2 Gene:pitx3 / 100496690 XenbaseID:XB-GENE-486162 Length:292 Species:Xenopus tropicalis


Alignment Length:67 Identity:36/67 - (53%)
Similarity:48/67 - (71%) Gaps:0/67 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 GKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKT 453
            |..|.|:|..||.|||.||:|||..|:...|||:|.||.:::.|.|.|.|::||::||||||||.
 Frog    54 GTLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 118

  Fly   454 EK 455
            |:
 Frog   119 ER 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 30/56 (54%)
pitx3XP_002935807.2 Homeodomain 61..117 CDD:459649 30/55 (55%)
OAR 250..267 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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