DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx1 and shox2

DIOPT Version :10

Sequence 1:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001093694.1 Gene:shox2 / 100101703 XenbaseID:XB-GENE-480993 Length:311 Species:Xenopus tropicalis


Alignment Length:188 Identity:64/188 - (34%)
Similarity:84/188 - (44%) Gaps:51/188 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 GKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKT 453
            |:.|.|:|..||.||..||.|||:.|.|.||||...||.||.:.||:|.|:|||:||||||.||.
 Frog   114 GQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ 178

  Fly   454 EKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDR 518
            |      .::.:..|.||             .|..|...|||::      ::.|..:        
 Frog   179 E------NQLHKGVLIGA-------------GSQFEACRVAPYV------NVGALRM-------- 210

  Fly   519 ETPTSDDTNTSYSAGSTHNSPISSFSI-SRLLFDAPPPAAGSAGGKGHHHHHHHHKGH 575
              |...|::.        |.|..||.: ::|..|       ||....|||.|.|...|
 Frog   211 --PFQQDSHC--------NVPSLSFQVQAQLQLD-------SAVAHAHHHLHPHLTAH 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649 33/56 (59%)
shox2NP_001093694.1 Homeodomain 121..177 CDD:459649 33/55 (60%)
OAR 292..307 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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