DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and PAX8

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_003457.1 Gene:PAX8 / 7849 HGNCID:8622 Length:450 Species:Homo sapiens


Alignment Length:328 Identity:71/328 - (21%)
Similarity:103/328 - (31%) Gaps:114/328 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 KSFAAGAGTCLPGSL-----APKDFGM---ESLNG-FGVG-PNSKKKKK---------------- 228
            ||.:.| .|.:|.|.     :|:...:   .|:|| .|:. |.|.|:|.                
Human   151 KSLSPG-HTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQS 214

  Fly   229 ----KRRHSRT-IFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKT 288
                .|:|.|| .|:.:.||.||..|:..|||:.||                             
Human   215 SSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYA----------------------------- 250

  Fly   289 EKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKD 353
                ..|....|.|||        |||  :|.|..|:.                |:....|....
Human   251 ----SPSHTKGEQGLY--------PLP--LLNSTLDDG----------------KATLTPSNTPL 285

  Fly   354 DSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSA-------STSAPPTS 411
            ...:|.|:........||.       .|:...|..::..|..|||..:||       .:..||.:
Human   286 GRNLSTHQTYPVVADPHSP-------FAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFN 343

  Fly   412 TSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLG--AGAVVT 474
            ...:|.:.       .|..|..:..|....:|...|....|:....|....:|...|  ||:..:
Human   344 AFPHAASV-------YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYS 401

  Fly   475 GCA 477
            |.|
Human   402 GNA 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 15/57 (26%)
OAR 556..572 CDD:461067
PAX8NP_003457.1 PAX 9..133 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..222 12/62 (19%)
Pax2_C 337..449 CDD:463563 16/75 (21%)
Blue background indicates that the domain is not in the aligned region.

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