DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and pax8

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:XP_012814730.1 Gene:pax8 / 780226 XenbaseID:XB-GENE-483693 Length:467 Species:Xenopus tropicalis


Alignment Length:253 Identity:62/253 - (24%)
Similarity:94/253 - (37%) Gaps:68/253 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 EQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCH--------ALSSSTESL--- 389
            ::.|  |.||::|.::    |:|..:....:...|  .|....||        :.||||.|.   
 Frog   220 QESC--RLSIDSQGSM----GISRKQLRTEAYGHH--PLDALECHFQRQHFPESYSSSTHSKTEQ 276

  Fly   390 ---------NVVSPAPSSCPTSASTSAPPTST-SGYAGAAS-SAATTPTGASTTNSSSSPHIELG 443
                     |.:....||..::.:|.....|| .||:..:. ||.|....||.::|:||....|.
 Frog   277 ALYTLPLLNNAMDDGKSSLTSTNTTIGRNLSTHQGYSALSELSAFTIKQEASDSSSASSTPSSLC 341

  Fly   444 SPSPQQQQHLQLQ-----------QQQQQQASLY------LGAGAVVTGCAPPSYHPLLDA---- 487
            ||:     .|.||           ......||:|      :.:|..|.|...|.|.|.:.:    
 Frog   342 SPT-----FLDLQPISSGCSAPSFSAFSHPASVYGQFTSHMASGRDVVGSTLPGYPPHIPSGQGN 401

  Fly   488 -ANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQ--------QQQQQQQATATAP 536
             |::|.||..|:..|:   ...|.:..|.||..:..:        .......||.|||
 Frog   402 YASSAIAGMVAAGGDY---SGNAYSHGAYAAYGESWRFPSSSLLGSPYYYSSATRTAP 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649
OAR 556..572 CDD:461067
pax8XP_012814730.1 PAX 26..151 CDD:128645
Pax2_C 355..465 CDD:463563 24/105 (23%)
Blue background indicates that the domain is not in the aligned region.

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