DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and SEBOX

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001074306.3 Gene:SEBOX / 645832 HGNCID:32942 Length:190 Species:Homo sapiens


Alignment Length:246 Identity:69/246 - (28%)
Similarity:92/246 - (37%) Gaps:77/246 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 PKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELP 270
            |......|.:| |.|..|.::|      ||.|:..||.:||.||....||::...|.|:..|.||
Human     2 PSPVDASSADG-GSGLGSHRRK------RTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLP 59

  Fly   271 EDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGA-MVRHSLPLPDTILKSAKDNDAVAPWLLG 334
            |.::|||||.|.||..|..|    |.|::.    |: ..:.|..||||:.:         ||   
Human    60 EAKVQVWFQKRWAKIIKNRK----SGILSP----GSECPQSSCSLPDTLQQ---------PW--- 104

  Fly   335 MEQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSC 399
                              |.........|:|:..      ..|.|.               .|||
Human   105 ------------------DPQMPGQPPPSSGTPQ------RTSVCR---------------HSSC 130

  Fly   400 PTSASTSAPPTS-TSGYAGAASSAATTPTGASTTNSS---SSPHIELGSPS 446
            |      ||..| ..|:.||.:.|.....|||..:.|   ::|...|||.|
Human   131 P------APGLSPRQGWEGAKAVAPWGSAGASEVHPSLERATPQTSLGSLS 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 25/56 (45%)
OAR 556..572 CDD:461067
SEBOXNP_001074306.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 7/28 (25%)
Homeodomain 20..73 CDD:459649 24/58 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..161 28/139 (20%)
Blue background indicates that the domain is not in the aligned region.

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