DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and drgx

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001032182.1 Gene:drgx / 560399 ZFINID:ZDB-GENE-070330-1 Length:287 Species:Danio rerio


Alignment Length:305 Identity:88/305 - (28%)
Similarity:125/305 - (40%) Gaps:69/305 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 PQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKE 251
            |||:     ...|...:|....||..:...|..|    ..::|:|.:||.||..|||.||..|.:
Zfish     8 PQLE-----GECCRTNTLNTNGFGNHASGDFDDG----FLRRKQRRNRTTFTLQQLEALEAVFAQ 63

  Fly   252 AHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVW----GGSTIMAE-----YGLYGAM 307
            .|||||:|||.|::|..|.|.|:|||||||||||||||:..    ||...|.|     ..|..:.
Zfish    64 THYPDVFAREELAMKINLTEARVQVWFQNRRAKWRKTERGTSEQDGGKEQMNEGNPPARNLNQSP 128

  Fly   308 VRHS-----------------------LP--LPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEA 347
            |.||                       .|  ||.|:|.:       |.:...:.|....:.|...
Zfish   129 VDHSRSKKEPMELQQNINRVVGSGGPFFPSCLPGTLLNT-------ATYAQALSQVATLKGSPLC 186

  Fly   348 QSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSS---TESLNVVSPAPSSCPTSASTSAPP 409
            ...:.|..|:| .....|.:|..:..::..|..|...|   .:|.|::...              
Zfish   187 SCCVPDPMGLS-FLPPYGCQSNRTASVAALRMKAREHSEAVLQSANLLGTG-------------- 236

  Fly   410 TSTSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQ 454
             ||:|.|...:...:..||..::.:||:|.|.....:|.:..|.|
Zfish   237 -STTGPAAGPALPLSQNTGGDSSPNSSTPKITSLRRTPDKHLHCQ 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 33/52 (63%)
OAR 556..570 CDD:281777
drgxNP_001032182.1 Homeobox 46..98 CDD:278475 33/51 (65%)
OAR 207..223 CDD:281777 2/15 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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