DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsx2 and repo

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:621 Identity:147/621 - (23%)
Similarity:198/621 - (31%) Gaps:271/621 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 VSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHH 140
            :|.||:..:||||:|     ||||:.:|:..|...:......:..::........||...:.:|.
  Fly   106 ISAPQKLVEQQQQQQ-----HHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHP 165

  Fly   141 --------------------QHQHQHHPHHHPHHPH----------------GAVGGPPPPPPMQ 169
                                ||.:...|||..|..|                |:.||....|.  
  Fly   166 LNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPD-- 228

  Fly   170 HHHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFG-------MESLNGFGVG------- 220
                          :...||:  |.|||...|.|.:....|       ..|.:..|||       
  Fly   229 --------------EMCSQLE--AGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGT 277

  Fly   221 ------PNSKK-----KKK------KRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTE 268
                  |.:||     |||      |::.:||.||:||||:||.||:.|.||||:|||.|::|..
  Fly   278 AGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLN 342

  Fly   269 LPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLL 333
            |.|.|:|||||||||||||                      |..|.....:|::           
  Fly   343 LSESRVQVWFQNRRAKWRK----------------------HEPPRKTGYIKTS----------- 374

  Fly   334 GMEQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLN--VVSPAP 396
                                                             :..|.:||  .::|..
  Fly   375 -------------------------------------------------TPPTATLNPGTLAPPF 390

  Fly   397 SSCPTSASTSAPPTSTSGYAGAASSAATTPT------------------GASTTNSSSSP--HIE 441
            :|.| ..:|..||.|...:....:....||.                  ||....|...|  |.|
  Fly   391 TSYP-QTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYE 454

  Fly   442 LGSP--------------------------------SPQQQQ-----------HLQLQQQQQQQA 463
            .|||                                :.||||           |.|.||||||..
  Fly   455 YGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLN 519

  Fly   464 SLYLGA---------------------GAVVTGC----APPSYHPLLDAANAAGAGAAASSKDFH 503
            ..||.|                     ||   .|    |...::.......||.||..:|..:..
  Fly   520 GKYLSAEEAKYVHLQCHQSGGGLELSPGA---SCHLVEAQGQHYVTTATGGAASAGGTSSDDNDS 581

  Fly   504 MIMNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLH 539
            ..|.|.:     .:::..|||||||.|:....|.||
  Fly   582 GGMQTVI-----KSEEVSQQQQQQQGQSYVLPPFLH 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 35/52 (67%)
OAR 556..570 CDD:281777
repoNP_477026.1 Homeobox 313..360 CDD:278475 31/46 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450967
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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