DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsx2 and ey

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:710 Identity:155/710 - (21%)
Similarity:240/710 - (33%) Gaps:229/710 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TTTAGATVAKERQTPTPPKTTNATMATAAT-SAAT----AATPTNAAE-GNLTSVSEPQQQPQQQ 86
            :|:||.:::.:.........:|....:..| |::|    .|||.|::| |..::..|..:|....
  Fly   238 STSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGEGSEQEAIY 302

  Fly    87 QQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAA------AVHHHH----Q 141
            ::.:..:..|             ||.......|.||......|:.|..      .||.:|    |
  Fly   303 EKLRLLNTQH-------------AAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQ 354

  Fly   142 HQHQHHPHHHPHHPHGAVGGPPPPPPMQHHHPHHP----HHPLLHAQGFPQLKSFAAGAGTCLPG 202
            ||.|..|   |.|..|:               .:|    ..|:..|.....:.::|:|..  |..
  Fly   355 HQQQSWP---PRHYSGS---------------WYPTSLSEIPISSAPNIASVTAYASGPS--LAH 399

  Fly   203 SLAPKDFGMESL-----------------------------NGFGVGPNSKK------------- 225
            ||:|.: .:|||                             .|.|.|.||..             
  Fly   400 SLSPPN-DIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQA 463

  Fly   226 ---KKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRK 287
               .|:|.:.:||.||:.|::.||:.|:..|||||:|||.|:.|..|||.||||||.|||||||:
  Fly   464 RLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRR 528

  Fly   288 TEKV------------------------------------------WGGSTIMAEYGL------- 303
            .||:                                          .||.::....||       
  Fly   529 EEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLS 593

  Fly   304 -------YGAMVRHS---LPLPDTILKSAKDND------------AVAPWLLGMEQKCMHRKS-- 344
                   .||.:..|   .|:|........|||            :..|..:|..|...|.:|  
  Fly   594 TNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNG 658

  Fly   345 -------IEAQS-ALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPT 401
                   :.|.| .|..:||      |.|:..::..       |...|.::|...|:|.||...:
  Fly   659 HAQGHALVPAISPRLNFNSG------SFGAMYSNMH-------HTALSMSDSYGAVTPIPSFNHS 710

  Fly   402 SASTSAPPTSTSGYAGAASSAATTPTGASTTNSSSSP-HIELGSPSPQQQQHLQLQQQQQQQASL 465
            :....|||             :..|.....|.||..| |:.|..|......|..:.....:.|.:
  Fly   711 AVGPLAPP-------------SPIPQQGDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGV 762

  Fly   466 YLGAGA---VVTGCAPPSYHPL---------------LDAANAAGAGAAASSKDFHMIMNTAVAA 512
            .||:|.   :...|:...|..|               .|::.:|.:.|:|:....|.|...:..:
  Fly   763 GLGSGQSANLGASCSGSGYEVLSAYALPPPPMASSSAADSSFSAASSASANVTPHHTIAQESCPS 827

  Fly   513 AAAAAQQ---QHQQQQQQQQQATATAPGLH-AHNLAAALMEHDPDAFRNNSIACLRAKAQ 568
            ..::|..   .|.........:.|.:...| ::|.|::.....|.:....|......|.|
  Fly   828 PCSSASHFGVAHSSGFSSDPISPAVSSYAHMSYNYASSANTMTPSSASGTSAHVAPGKQQ 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 33/56 (59%)
OAR 556..572 CDD:461067 3/13 (23%)
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeodomain 473..528 CDD:459649 33/54 (61%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.