DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and ftz

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:489 Identity:85/489 - (17%)
Similarity:118/489 - (24%) Gaps:230/489 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VAAATEAPTDLTTTAGATVAKERQTP------------TPPKTTNATMATAAT---SAATAATPT 66
            :||..|.|:.|.......|.|.:.||            .|..:|..|.:.|.:   ...|..||:
  Fly    99 IAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEYVTVPTPS 163

  Fly    67 NAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQ 131
            .:.:.:...|..||.|.|:.:                                            
  Fly   164 ASEDVDYLDVYSPQSQTQKLK-------------------------------------------- 184

  Fly   132 LAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPPPPPPMQHHHPHHPHHPLLHAQGFPQLKSFAAGA 196
                                    :|....|||..|                ...|.|:..:...
  Fly   185 ------------------------NGDFATPPPTTP----------------TSLPPLEGISTPP 209

  Fly   197 GTCLPGSLAPKDFGMESLNGFGVGPN---------------SKKKKKKRRHSRTIFTSYQLEKLE 246
            .:  ||..:......|..:.....||               |..|..||  :|..:|.||..:||
  Fly   210 QS--PGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASDCKDSKR--TRQTYTRYQTLELE 270

  Fly   247 EAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRHS 311
            :.|....|.....|..::....|.|.:|::||||||                             
  Fly   271 KEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRR----------------------------- 306

  Fly   312 LPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSR 376
                   :||.||                                                    
  Fly   307 -------MKSKKD---------------------------------------------------- 312

  Fly   377 SRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATTP-------TGASTTNS 434
               ..|.||          |..|....:...||...:..|...:.:...|       |.|....|
  Fly   313 ---RTLDSS----------PEHCGAGYTAMLPPLEATSTATTGAPSVPVPMYHHHQTTAAYPAYS 364

  Fly   435 SSSPH-IELGSPSPQQQQHLQLQ---QQQQQQAS 464
            .|..| ..|.:..||||.|.|..   ||.|.|.|
  Fly   365 HSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCS 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 19/56 (34%)
OAR 556..572 CDD:461067
ftzNP_477498.1 FTZ 1..248 CDD:397787 33/234 (14%)
Homeodomain 255..311 CDD:459649 22/93 (24%)
KLF1_2_4_N <321..404 CDD:425360 22/78 (28%)
Blue background indicates that the domain is not in the aligned region.

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