DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and zen

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster


Alignment Length:439 Identity:97/439 - (22%)
Similarity:152/439 - (34%) Gaps:134/439 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 ASRMAYFNAHAAVAAAFM--PHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPP--------PP 165
            :|.|.|:..|.|...::.  |.::        ::....:.|||..:|   :|.||        |.
  Fly     2 SSVMHYYPVHQAKVGSYSADPSEV--------KYSDLIYGHHHDVNP---IGLPPNYNQMNSNPT 55

  Fly   166 PPMQHHHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKR 230
            ....|..|.|.|..  |......|.|                            .||...::.|.
  Fly    56 TLNDHCSPQHVHQQ--HVSSDENLPS----------------------------QPNHDSQRVKL 90

  Fly   231 RHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGG- 294
            :.|||.|||.||.:||..||...|.....|..::.:..|.|.::::||||||.|::|  .:.|. 
  Fly    91 KRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMKFKK--DIQGHR 153

  Fly   295 --------STIMAEYGLYGAMVRHSL-----PLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIE 346
                    :...||...:..:|:..:     |...|.....:...||||        ...:...:
  Fly   154 EPKSNAKLAQPQAEQSAHRGIVKRLMSYSQDPREGTAAAEKRPMMAVAP--------VNPKPDYQ 210

  Fly   347 AQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTS 411
            |...:|.       |.|..:....|.|||....|                    .:.:|:||..|
  Fly   211 ASQKMKT-------EASTNNGMCSSADLSEILEH--------------------LAQTTAAPQVS 248

  Fly   412 TSGYAGAASSAATTPTGASTTNSSSSP------HIELGSPSPQQQQHLQLQQQQQQQASLYLGAG 470
            |          ||:.||.||.::|||.      :::|...|.:|......|...:.:::..|   
  Fly   249 T----------ATSSTGTSTNSASSSSSGHYSYNVDLVLQSIKQDLEAAAQAWSKSKSAPIL--- 300

  Fly   471 AVVTGCAPPSYHPLLDAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQ 519
                  |..|:||...:.......||.|       ||.:....||.:::
  Fly   301 ------ATQSWHPSSQSQVPTSVHAAPS-------MNLSWGEPAAKSRK 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 23/56 (41%)
OAR 556..572 CDD:461067
zenNP_476793.1 Homeodomain 91..147 CDD:459649 23/55 (42%)
Blue background indicates that the domain is not in the aligned region.

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