DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and PHDP

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster


Alignment Length:83 Identity:43/83 - (51%)
Similarity:55/83 - (66%) Gaps:3/83 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 DFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPED 272
            ||.::|....|:   |...|.|:|..||.|||.||.:||:.|.|.||||:|.||.::.|..|.|.
  Fly    93 DFHLKSYGDDGL---SLTDKSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEA 154

  Fly   273 RIQVWFQNRRAKWRKTEK 290
            |:||||||||||:||.|:
  Fly   155 RVQVWFQNRRAKFRKQER 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 32/52 (62%)
OAR 556..570 CDD:281777
PHDPNP_523834.1 Homeobox 116..168 CDD:278475 32/51 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 1 0.900 - - E1_KOG0494
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.810

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