DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and otp

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001286654.1 Gene:otp / 37364 FlyBaseID:FBgn0015524 Length:416 Species:Drosophila melanogaster


Alignment Length:420 Identity:116/420 - (27%)
Similarity:165/420 - (39%) Gaps:125/420 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 NGFGVGPNSKK-------KKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPED 272
            ||.|...||.:       |.|::|| ||.||..||.:||..|.:.||||::.||.::::..|.|.
  Fly    95 NGNGNNNNSMQQQDQHLDKNKQKRH-RTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTES 158

  Fly   273 RIQVWFQNRRAKWRKTEKVWG----GSTIMAEYGL--YGAMVRHSLPLPDTILKSA-----KDND 326
            |:|||||||||||:|.:|...    ...::..:||  :||.:. ::.:.|.:..:.     :.:.
  Fly   159 RVQVWFQNRRAKWKKRKKTTNVFRTPGALLPSHGLPPFGANIT-NIAMGDGLCGTGMFGGDRWSV 222

  Fly   327 AVAPWLLGMEQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSS---TES 388
            .|.|...|..|.   .:|....|:|  :||::...:...:..|.|  ......:||..|   ..|
  Fly   223 GVNPMTAGFGQL---NQSSPLSSSL--NSGLNSGINMGSALGAGS--YQHYGLNALGDSMMYQHS 280

  Fly   389 LNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATTPTGASTTNSSSSPHIEL-GSPSP-QQQQ 451
            :..||..||..|   |.:.||...|      .|:.|.|..::..|||.:   || |.|.| .|||
  Fly   281 VGGVSCGPSGSP---SATTPPNMNS------CSSVTPPPLSAQPNSSQN---ELNGEPMPLHQQQ 333

  Fly   452 HLQLQQQQQQQASLYLGAGAVVTGCAPPSYHPLLDAANAAGAGAAASSKDFHMIMNTAVAAAAAA 516
            ..|..|.||||..               .:||:                           |....
  Fly   334 QQQTHQHQQQQTH---------------QHHPM---------------------------APPTP 356

  Fly   517 AQQQHQQQQQQQQQATATAPGLHAHNLAAALMEHDPDAFRNNSIACLRAKAQEHQARLLNNGGLF 581
            .|||.|..|..|..:......||                   |||.||.:|.|     ||....:
  Fly   357 TQQQQQLPQSMQSPSDGANDTLH-------------------SIAALRRRASE-----LNAIPSY 397

  Fly   582 LQVRRFAQGQAQIQDPSDMLKLSEEHNNNS 611
            ||:.           |.:.    |.:|:||
  Fly   398 LQMA-----------PHNY----EHYNSNS 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 31/56 (55%)
OAR 556..572 CDD:461067 7/15 (47%)
otpNP_001286654.1 Homeodomain 117..168 CDD:459649 26/51 (51%)

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