DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and unpg

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:460 Identity:108/460 - (23%)
Similarity:161/460 - (35%) Gaps:123/460 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PQRSPFAIQELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNATMATAATSAATAATP- 65
            |...||:|:.|:      |.:.|...|..:......:.|.....:..:|....|:::......| 
  Fly    26 PFPKPFSIESLI------ANQTPATATPPSPPEERDQEQEAEQEQELSARAMVASSALGLTQFPL 84

  Fly    66 ----------------TNAAEGNLTSVSEP-----QQQPQQQQQEQ--QHHQPHHHQYRE----- 102
                            |:...|.....|.|     .||||.|.|.|  ..|.|.|...::     
  Fly    85 YNPWLHGYFAQNHERLTHLIAGGCYLPSSPAGHPAAQQPQAQAQPQPPPPHPPTHALEKQLPPTL 149

  Fly   103 HHQMTMAAASRMAYFN-AHAAVAAAFMPHQLAA-----------AVHHHHQHQHQHHPHHHPHHP 155
            .|.:.    :|...|| |.|.||...:.::..|           :||...||.......|.....
  Fly   150 PHPLD----TRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHSLSVHARLQHMAAAGRMHEDQAN 210

  Fly   156 HGAVGGPPPPPPMQHHHP-----HHPHHPLLHAQGFPQLKSFAAGAGTCLPGSL--APKDFGME- 212
            .|......|.||..|..|     |.|..|.|.. |..:  .|.....:|...||  :|:::..| 
  Fly   211 PGMAQLQEPTPPQAHSSPAKSGSHSPMEPALDV-GMDE--DFECSGDSCSDISLTMSPRNYNGEM 272

  Fly   213 --SLNGF----------------------GVG-----PNSKKKKKKRRHSRTIFTSYQLEKLEEA 248
              |.||.                      |:|     .|......|.|..||.|||.||.:||..
  Fly   273 DKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELERE 337

  Fly   249 FKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGL------YGAM 307
            |....|..:..|..::...:|.|.::::|||||||||:   :|..|.|   .:||      .|..
  Fly   338 FHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWK---RVKAGLT---SHGLGRNGTTSGTK 396

  Fly   308 VRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMH------RKSIEAQSALKDDSGVSDHEDSAGS 366
            :  .:|:|..:     :..||......:|:.|:.      ||.:.|::       :...|..:||
  Fly   397 I--VVPIPVHV-----NRFAVRSQHQQLEKMCLSGPKPDLRKKLSAEA-------IGGFEKFSGS 447

  Fly   367 KSAHS 371
            .:|.|
  Fly   448 TNASS 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 24/56 (43%)
OAR 556..572 CDD:461067
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 22/54 (41%)
Blue background indicates that the domain is not in the aligned region.

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