Sequence 1: | NP_001284897.1 | Gene: | Vsx2 / 31469 | FlyBaseID: | FBgn0263512 | Length: | 645 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001260559.1 | Gene: | Lim3 / 35184 | FlyBaseID: | FBgn0002023 | Length: | 555 | Species: | Drosophila melanogaster |
Alignment Length: | 588 | Identity: | 129/588 - (21%) |
---|---|---|---|
Similarity: | 175/588 - (29%) | Gaps: | 240/588 - (40%) |
- Green bases have known domain annotations that are detailed below.
Fly 136 VHHHHQHQHQ-HHPHHHPHHPHGAVGGP------------------------------PPPPPMQ 169
Fly 170 H---------HHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESL----------- 214
Fly 215 ------------------------NG--------------------FGVGPNS------------ 223
Fly 224 --------------------------------KKKKKK-------------RRHSRTIFTSYQLE 243
Fly 244 KLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMV 308
Fly 309 RHSLPLPDTILKSAKD---------------NDAVAPWLLGMEQ---------KCMHRKSIEAQS 349
Fly 350 ALKD----------------DSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSS 398
Fly 399 CPTSASTSAPPTSTSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQA 463
Fly 464 SLYLGAGAVVTGCAP-PSYHPLLDAANAAGAGAAASS---KDFHMIMNTAVAAAAAAAQQQHQQQ 524
Fly 525 QQQ 527 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vsx2 | NP_001284897.1 | Homeobox | 233..286 | CDD:278475 | 25/52 (48%) |
OAR | 556..570 | CDD:281777 | |||
Lim3 | NP_001260559.1 | LIM1_Lhx3_Lhx4 | 122..173 | CDD:188754 | 4/50 (8%) |
LIM2_Lhx3_Lhx4 | 181..236 | CDD:188762 | 2/54 (4%) | ||
Homeobox | 259..312 | CDD:278475 | 25/52 (48%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 49 | 1.000 | Domainoid score | I2937 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1174754at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |